Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2187 ATGGCCGCCACCGCATCCTCCTTCATTGGAACTCGTCTTCCTATTACCCCATCCGGGTCGGGTCGGGTACACGCGAGATTCTCATTCGGCAAACCAAAAAGCGCACCGAAGAAATCGTCAAAAAAGCCCACTTCGGACCGGCCGCTGTGGTACCCGGGGGCCGTGGCGCCGGAGTGGCTGGACGGAAGCTTGGTGGGGGATTACGGGTTCGACCCGTTTGGGCTGGGAAAACCGGCGGAGTACTTGCAGTTCGACTTGGACTCATTGGACCAGAACTTGGCTAAGAATGTGGCTGGTGATGTGATCGGTACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTGTTTGGGTTGCAGAGGTTTCGCGAGTGTGAGCTGATCCATGGAAGGTGGGCTATGTTGGCTACACTCGGTGCCCTTACTGTTGAGTGGCTCACTGGTGTCACTTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCGTTCTCCATATCAACATTGATATGGATAGAGGTTCTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCTGAGCTTGACCCAGAGAAGAGACTTTACCCTGGGGGCAAGTACTTTGATCCCCTTGGCTTAGCGGCCGACCCCGAGAAGAAGGCGGCGCTTCAATTGGCCGAGATTAAGCATGCTCGTCTCGCCATGGTCGCGTTCCTCGGTTTTGCTGTTCAAGCTGCTGCCACTGGCAAAGGCCCCCTCAATAACTGGGCAACCCATCTGAGTGACCCCCTCCACACCACCATTATTGACACACTCTTCTTTTCATCTTGA 852 54.46 MAATASSFIGTRLPITPSGSGRVHARFSFGKPKSAPKKSSKKPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKAALQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTLFFSS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34972337 34973935 - CcPI632755_10g021870.1 Cco10g2187 191145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2187 283 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 276 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco10g2187 283 Pfam Chlorophyll A-B binding protein 56 252 IPR022796 -
Cco10g2187 283 Gene3D Chlorophyll a/b binding protein domain 50 281 - -
Cco10g2187 283 MobiDBLite consensus disorder prediction 17 49 - -
Cco10g2187 283 SUPERFAMILY Chlorophyll a-b binding protein 43 279 - -
Cco10g2187 283 FunFam Chlorophyll a-b binding protein, chloroplastic 102 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2259 Cco-Chr9:36869967 Cco10g2187 Cco-Chr10:34972337 6.20E-40 dispersed
Cco10g2187 Cco-Chr10:34972337 Cco11g1413 Cco-Chr11:26888750 1.00E-30 dispersed
Cco10g2187 Cco-Chr10:34972337 Cco04g0901 Cco-Chr4:24676469 3.60E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2187 K08915 - sly:101249002 495.352