Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2192 ATGCTGCAGCAGAACATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGAGTTCGCTGAGGCACGCTCGAACGGCTCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCATCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCATTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTCATAGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTATGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCCATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGGATCGGCTGACGTGGGGGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCGATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTAAGGATGCAGCAGAAACTTGGGGCTTATCTGTTGCGTTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGATGAGGTTACTATCAACAATTTAGGGTGGTCGAGAGTCCGACTAAAGCAACAATAA 1335 45.99 MLQQNMDFEQGTSILQNGVVKSSLRHARTAHNMSSSSLRKKSDLTLISKVRLGCLRQLLVNLQEVIFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTSLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCHSLPMLFPYAGGSADVGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRRLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIKDAAETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINDEVTINNLGWSRVRLKQQ 444
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 34992493 35000481 - CcPI632755_10g021920.1 Cco10g2192 191150
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2192 444 Pfam Sodium/calcium exchanger protein 280 423 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2192 444 Pfam Sodium/calcium exchanger protein 93 249 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g2192 444 FunFam Vacuolar cation/proton exchanger 268 424 - -
Cco10g2192 444 Gene3D - 264 423 IPR044880 -
Cco10g2192 444 Gene3D - 120 261 IPR044880 -
Cco10g2192 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 428 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cco10g2192 444 NCBIfam calcium/proton exchanger 76 423 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0404 Cco-Chr10:4771914 Cco10g2192 Cco-Chr10:34992493 4.60E-89 dispersed
Cco10g2192 Cco-Chr10:34992493 Cco03g0081 Cco-Chr3:826407 2.20E-112 wgd
Cco10g2192 Cco-Chr10:34992493 Cco04g0890 Cco-Chr4:24556687 3.60E-163 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2192 K07300 - csv:101213176 667.537