Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2197 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAACACAACCCTAAACATGCCGAAAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGCGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCAAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 723 45.92 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKHNPKHAESCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35034041 35036338 + CcPI632755_10g021970.1 Cco10g2197 191155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2197 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Cco10g2197 240 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g2197 240 MobiDBLite consensus disorder prediction 136 177 - -
Cco10g2197 240 Pfam PHD-finger 187 233 IPR019787 -
Cco10g2197 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Cco10g2197 240 SMART PHD_3 186 234 IPR001965 -
Cco10g2197 240 MobiDBLite consensus disorder prediction 147 162 - -
Cco10g2197 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Cco10g2197 240 FunFam PHD finger alfin-like protein 179 235 - -
Cco10g2197 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Cco10g2197 240 MobiDBLite consensus disorder prediction 163 177 - -
Cco10g2197 240 PANTHER CPG BINDING PROTEIN 8 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g2197 240 CDD PHD_AL_plant 186 236 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0716 Cco-Chr10:10246505 Cco10g2197 Cco-Chr10:35034041 9.00E-81 dispersed
Cco10g2197 Cco-Chr10:35034041 Cco11g0181 Cco-Chr11:1797278 3.60E-85 dispersed
Cco10g2197 Cco-Chr10:35034041 Cco07g0433 Cco-Chr7:4899648 1.20E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60199 PF12165 Alfin 6.20E-67 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2197 K26274 - csv:101211970 457.988