Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2200 ATGGAAGGCCATAATCCTCATCCTCATCCTCACCCCCATCCCCTTATTCAGCTCCACCAGCAGCAGCAAATTCAACTTCCTCCGCCACCGCCGCATCTCCACCAGAGCCTCGCCGTCTCCGCCGATCAAACCACAGCAACAGCCGCCGACAGATTCCCTCAATGGAGTATTCAAGAAACAAAGGAGTTTTTGATGATCAGAGCCGAGCTGGATCAAACCTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACTGCCTCCAAAATGAAGGAAAAGGGTTTTAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCGTTACAAGGGTTGTGAAACAATGGAGCCAGAAATTTCAAGGCAGCAATTTCCATTCTACACAGAGTTACAAGCAATATTTGGGGCAAGAATGCAAAGAATATTATGGGCAGAGGCAGAGAGCGGTGGTAGCGGGTCGAAGAAGAAGACGTTACCATTGTCGTCTGACGATGACGAAGAAAACGACGATAGCGATGGCGATGGAGGCGAGACGAAAGTTAGCAGTAGGAAGAGGAAAAAAGTTAAAGGAATGGGCGGTACGACGACGGGAGGCGGAGAGGGCAGTGGAAAGAGTAGTATCAATGATTTGAAAGAAATGTTGGAAGATTTTATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAAGAGAGACAAATGAGGGAAATGGAATGGAGAAGAAACATGGAAGCTTTAGAACATGAGAGGATAATGTTGGAAAGAAGATGGAGAGAAAGAGAAGAACAAAGGAGAATGAGAGAAGAAGTTAGGGCTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGCTTAGAAGAGATGATCATATTTAA 915 44.92 MEGHNPHPHPHPHPLIQLHQQQQIQLPPPPPHLHQSLAVSADQTTATAADRFPQWSIQETKEFLMIRAELDQTFMETKRNKLLWEITASKMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEPEISRQQFPFYTELQAIFGARMQRILWAEAESGGSGSKKKTLPLSSDDDEENDDSDGDGGETKVSSRKRKKVKGMGGTTTGGGEGSGKSSINDLKEMLEDFMNQQMQMEVQWREAFEAREKERQMREMEWRRNMEALEHERIMLERRWREREEQRRMREEVRAEKRDALITALLNKLRRDDHI 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35082107 35083197 + CcPI632755_10g022000.1 Cco10g2200 191158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2200 304 Gene3D - 55 116 - -
Cco10g2200 304 Coils Coil 248 275 - -
Cco10g2200 304 PANTHER FI21293P1 28 300 - -
Cco10g2200 304 MobiDBLite consensus disorder prediction 152 212 - -
Cco10g2200 304 Coils Coil 212 232 - -
Cco10g2200 304 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Cco10g2200 304 FunFam Zinc finger and SCAN domain-containing 20 55 116 - -
Cco10g2200 304 CDD GT1 53 118 - -
Cco10g2200 304 Pfam Myb/SANT-like DNA-binding domain 54 138 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1209 Cco-Chr7:25938709 Cco10g2200 Cco-Chr10:35082107 2.40E-24 transposed
Cco10g2200 Cco-Chr10:35082107 Cco04g0886 Cco-Chr4:24471932 1.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60200 PF13837 Myb_DNA-bind_4 2.40E-18 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2200 - - - 0.0