Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2217 ATGGACATGGATACCGACGAAAATTCGAATGCCAAAGGAAAGGAAGGGCAAGGGAAGCTCATAATGGTAATATTAGTGGGCGCACCTGGAAGCGGCAAATCCACCTTCTGCGAGCTTGTAATGGGTTCCTCTTCTCGCCCTTGGGTTCGAATCTGTCAGGATACCATTGGAAATGGAAAGTCTGGAACCAAAGCCCAGTGCTTAAAGAGTGCAGCCAGTGCACTGAATAATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAATAGAGCAGCGCGCTGATTTTGTGAAGCTCGGTGGCCCTCAAGTAGATGTACATGCCGTTGTATTAGATCTTCCTGCACAGCTCTGTATTTCTCGTTCTGTGAAGCGGACTAGTCATGAAGGGAACTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAAGAAAGAATTGCCCAAACTAAATGAAGGGTTCACTCGCATAACCTTTTGCCACAATGAGACCGATGTTCAATCCGCTATAGATATGTACAAATCGCTTGATTTACATAATTTGCTTCCACATGGATGTTTTGGACAGAAGAATCCAAACAAGAAAGTACAACTTGGCATAATGAAGTTCTTGAAGAAAGCAGAAAAACCTTCTGAGACGCGTTCTAGTGCCAATACTGTTAAGGATTCTCCAACTCCACAAACTACCCAGGAAAATAGCGACTCTTGTGATAAAAAGGAAGAGTCTGCCTGCACAATGTCGAAAAATGTAGATATAGAGTCAGAGAAAGGTGAATGTCCAGGCATTAGATCCTTAGAAGACGATATTTCTCAAAGCAATTCTCCAACTCTTGCATTTCCATCTATTTCAACTTCAGATTTCAAGTTTAGCCATGAAAAAGCTGCTGAAATTATTGTTGAGAAGGTTGAGGAATTCATGGATAAGCTTGGAAATGCCAGACTTGTACTGGTAGACTTGAGTCGTGGATCAAAGATCTTGTCTTTGGCTAAAGCTAAAGCAGCTAAGAAAAATATTAGTTCCACCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAATTCAGAAGGTGGATTGCGGTGCAATGTTATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCAACCTGGCAATGCCGTGGCCGTTCCGTTGCCTTCAACTTCTCCTTTGTTCAATAGGGAAGGAGTAACCCATGTTATACATGTTCTTGGACCCAACATGAATCCACAGAGGCCGAATTATCTCAGCAATGACTATGATGAAGGCTGCAAACTTCTTCGCAATGCTTACTCTTCCTTATTTCAAGCCTTTATTTCAATTGTAGAAGACAAATTTAAGTCGGTTAAGGAAATTCACGAACGCCTCGGCTCAGTACCTTCAGAACCACAAAAGCACTCTGAGGACAGCCATCACAAGTTTAAGAGAGAGAATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAAGATCCAACTGAAGCATTAAACCAAAACAACAATAAGACTGTCCCCAAAATGAGTAAGCACTGGGGTTCATGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGCAACATAGCGATACTGTACTGGAGACATCAGATGATGTTGTAATACTGAATGATATTTATCCAAAGGCACGCAAGCATCTTCTAGTAGTGGCTCGGCATGAAGGCCTCGATCAACTAACTGATGTATGTAGAGAACACCTTCCATTGTTGAGGACAATGCACGCTGTGGGTTTGAAGTGGATCGATAAGTTCTTTCATGAAGATGCATCATTAGTTTTTCGCCTTGGATACCACTCGGCTCCATCAATGAGGCAACTGCACCTACATGTTATAAGCCAGGATTTCGACTCCAGTCACCTGAAAAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCAGAGACTCGGTTGCCGTTATGGACGAAGTCAGTAGCAATGGAAAGGCGAGCATCATGGACGATGAGAGCTTAATGTCTATGGAGTTACGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTGCCCAAATTGAAAGCGCATAGTTTCAAATGCCAAGCGCCTTTCCCGTCCACACTACTCGAGGGCGGTCGTTTAGTGACTGCGCCAAGCGGAGGGAGCGTGAAGGGGAGTTTGGAAATCCTTGGTCATTAG 2268 43.39 MDMDTDENSNAKGKEGQGKLIMVILVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNNGKSVFVDRCNLEIEQRADFVKLGGPQVDVHAVVLDLPAQLCISRSVKRTSHEGNLSGGKAAAVVNKMLQKKELPKLNEGFTRITFCHNETDVQSAIDMYKSLDLHNLLPHGCFGQKNPNKKVQLGIMKFLKKAEKPSETRSSANTVKDSPTPQTTQENSDSCDKKEESACTMSKNVDIESEKGECPGIRSLEDDISQSNSPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMDKLGNARLVLVDLSRGSKILSLAKAKAAKKNISSTKFFTFVGDITKLNSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQQANSLQPGNAVAVPLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLSNDYDEGCKLLRNAYSSLFQAFISIVEDKFKSVKEIHERLGSVPSEPQKHSEDSHHKFKRENLQNPERSKKWKGSQDPTEALNQNNNKTVPKMSKHWGSWAQALYNTAMHPEQHSDTVLETSDDVVILNDIYPKARKHLLVVARHEGLDQLTDVCREHLPLLRTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFDSSHLKNKKHWNSFNTDFFRDSVAVMDEVSSNGKASIMDDESLMSMELRCNRCRSAHPNLPKLKAHSFKCQAPFPSTLLEGGRLVTAPSGGSVKGSLEILGH 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35203958 35208277 - CcPI632755_10g022170.1 Cco10g2217 191175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2217 755 MobiDBLite consensus disorder prediction 487 536 - -
Cco10g2217 755 MobiDBLite consensus disorder prediction 522 536 - -
Cco10g2217 755 MobiDBLite consensus disorder prediction 216 235 - -
Cco10g2217 755 MobiDBLite consensus disorder prediction 487 521 - -
Cco10g2217 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 166 IPR027417 -
Cco10g2217 755 Gene3D - 545 725 IPR036265 -
Cco10g2217 755 SUPERFAMILY HIT-like 533 707 IPR036265 -
Cco10g2217 755 Pfam AAA domain 22 149 - -
Cco10g2217 755 Gene3D Leucine Aminopeptidase, subunit E, domain 1 328 482 IPR043472 -
Cco10g2217 755 PANTHER APRATAXIN-RELATED 84 741 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Cco10g2217 755 MobiDBLite consensus disorder prediction 210 243 - -
Cco10g2217 755 SUPERFAMILY Macro domain-like 330 478 IPR043472 -
Cco10g2217 755 Gene3D Leucine Aminopeptidase, subunit E, domain 1 264 327 IPR043472 -
Cco10g2217 755 FunFam aprataxin isoform X2 544 724 - -
Cco10g2217 755 ProSitePatterns HIT domain signature. 632 650 IPR019808 -
Cco10g2217 755 ProSiteProfiles Macro domain profile. 333 586 IPR002589 -
Cco10g2217 755 Pfam Scavenger mRNA decapping enzyme C-term binding 551 663 - -
Cco10g2217 755 Pfam Macro domain 369 466 IPR002589 -
Cco10g2217 755 ProSiteProfiles HIT domain profile. 550 658 IPR011146 GO:0003824(InterPro)
Cco10g2217 755 SMART YBR022w_8 345 501 IPR002589 -
Cco10g2217 755 FunFam Transcription factor bHLH140 8 178 - -
Cco10g2217 755 Gene3D - 3 179 IPR027417 -
Cco10g2217 755 Pfam C2HE / C2H2 / C2HC zinc-binding finger 668 719 IPR032566 -
Cco10g2217 755 SUPERFAMILY Macro domain-like 276 314 IPR043472 -
Cco10g2217 755 FunFam Transcription factor bHLH140 326 473 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2217 K10863 - csv:101216867 1326.23