Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2221 | ATGAACAACACCATCTCGCCGGGAAACATGGCCGCGGGAACCCCATCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTTAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCGTTTGGCGATCAGTTGATTCCTCTGTGGGGAAAAGGAATTCCAGCTGTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACATAAGCAACAATGGAAGTGTAACGCCAAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAATTTACTTTTGCTGCGATTACGGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGCGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGAGTAATTGATTACTCCGGCGGCTATGTGATTCATCTTTCGTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCCCCGAATAACGTACTGCTGATGTTGGCCGGAGCCGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGTGCGGCGACGAGTCTGCTGGTTTGGACCATATTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCTGGGAGTGTTCCATGGCTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAGAAGGCTGATGACACGCTTGGTGTATTTCACACGCACGCAGTGGCGGGACTGATGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCACTCTATGCGACCTATACCTACCGGTCACCGGCACACGCGGCGCCTTCTACGGCAAGAACGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGATCCACCTTCATCATAGGATGGAACATCGTGTCGACCACCATAATCCTCCTCTTTATTCGGCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGACGGCACGGCAATGCGGCCGCCGCCTATATGGAAGAGGGAACTGGCTCGCCTTATATCAATGGTGCTCGAGGTGTAATCATCGAGTTGTAA | 1467 | 51.67 | MNNTISPGNMAAGTPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPAVSQSYLINQANIPESGYISNNGSVTPRIEPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSVPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGKNGGVQFLKQLAGSTFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAAAYMEEGTGSPYINGARGVIIEL | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35225742 | 35229712 | - | CcPI632755_10g022210.1 | Cco10g2221 | 191179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2221 | 488 | PRINTS | Rhesus blood group protein signature | 355 | 371 | IPR002229 | GO:0005886(InterPro) | |
Cco10g2221 | 488 | PRINTS | Rhesus blood group protein signature | 136 | 152 | IPR002229 | GO:0005886(InterPro) | |
Cco10g2221 | 488 | PRINTS | Rhesus blood group protein signature | 262 | 284 | IPR002229 | GO:0005886(InterPro) | |
Cco10g2221 | 488 | PRINTS | Rhesus blood group protein signature | 317 | 335 | IPR002229 | GO:0005886(InterPro) | |
Cco10g2221 | 488 | PRINTS | Rhesus blood group protein signature | 231 | 249 | IPR002229 | GO:0005886(InterPro) | |
Cco10g2221 | 488 | Pfam | Ammonium Transporter Family | 25 | 447 | IPR024041 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Cco10g2221 | 488 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 15 | 458 | IPR001905 | GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER) | |
Cco10g2221 | 488 | ProSitePatterns | Ammonium transporters signature. | 192 | 217 | IPR018047 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) | |
Cco10g2221 | 488 | Gene3D | Ammonium transporter AmtB like domains | 2 | 450 | IPR029020 | - | |
Cco10g2221 | 488 | FunFam | Ammonium transporter | 8 | 450 | - | - | |
Cco10g2221 | 488 | SUPERFAMILY | Ammonium transporter | 17 | 429 | - | - | |
Cco10g2221 | 488 | NCBIfam | ammonium transporter | 22 | 447 | IPR001905 | GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0392 | Cco-Chr4:12752039 | Cco10g2221 | Cco-Chr10:35225742 | 2.10E-29 | dispersed | |
Cco08g1469 | Cco-Chr8:26536280 | Cco10g2221 | Cco-Chr10:35225742 | 2.00E-151 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2221 | K03320 | - | csv:101207321 | 905.975 |