Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2221 ATGAACAACACCATCTCGCCGGGAAACATGGCCGCGGGAACCCCATCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGGCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTTAATTCTGCGTTTATGGCGCTTTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCATCGTCGGTTACAGAATGGCGTTTGGCGATCAGTTGATTCCTCTGTGGGGAAAAGGAATTCCAGCTGTGTCTCAAAGTTACTTAATAAACCAAGCCAATATCCCTGAGAGTGGCTACATAAGCAACAATGGAAGTGTAACGCCAAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAATTTACTTTTGCTGCGATTACGGTGATTTTACTTGGTGGGTCTGTTCTTGCAAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGAGCATACAGCGTTTGGGGCGGAGGGTTTCTGTTTAAATGGGGAGTAATTGATTACTCCGGCGGCTATGTGATTCATCTTTCGTCTGGAATTGCTGGTTTAACAGCGGCTTATTGGGTTGGGCCGAGGATAAAGAGTGACAGAGAGAGGTTTCCCCCGAATAACGTACTGCTGATGTTGGCCGGAGCCGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGAGCGCCGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGTGCGGCGACGAGTCTGCTGGTTTGGACCATATTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCTGGCGCTGGAGTTGTGCAGACGTGGGCGGCTATCATAATGGGAGTTCTAGCTGGGAGTGTTCCATGGCTATCCATGATGGTTCTTCATAAAAAATTGAGTTTCTTGCAGAAGGCTGATGACACGCTTGGTGTATTTCACACGCACGCAGTGGCGGGACTGATGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCACTCTATGCGACCTATACCTACCGGTCACCGGCACACGCGGCGCCTTCTACGGCAAGAACGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGATCCACCTTCATCATAGGATGGAACATCGTGTCGACCACCATAATCCTCCTCTTTATTCGGCTGTTTATGCCCTTAAGAATGCCCGATGAGGAACTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCTAGACGGCACGGCAATGCGGCCGCCGCCTATATGGAAGAGGGAACTGGCTCGCCTTATATCAATGGTGCTCGAGGTGTAATCATCGAGTTGTAA 1467 51.67 MNNTISPGNMAAGTPSWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLIPLWGKGIPAVSQSYLINQANIPESGYISNNGSVTPRIEPNIPMASLVYFQFTFAAITVILLGGSVLARMNIKAWMAFVPLWVIFSYTVGAYSVWGGGFLFKWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSVPWLSMMVLHKKLSFLQKADDTLGVFHTHAVAGLMGGLLTGLLAEPTLCDLYLPVTGTRGAFYGKNGGVQFLKQLAGSTFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAAAYMEEGTGSPYINGARGVIIEL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35225742 35229712 - CcPI632755_10g022210.1 Cco10g2221 191179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2221 488 PRINTS Rhesus blood group protein signature 355 371 IPR002229 GO:0005886(InterPro)
Cco10g2221 488 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Cco10g2221 488 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Cco10g2221 488 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Cco10g2221 488 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
Cco10g2221 488 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco10g2221 488 PANTHER AMMONIUM TRANSPORTER MEP2 15 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cco10g2221 488 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco10g2221 488 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
Cco10g2221 488 FunFam Ammonium transporter 8 450 - -
Cco10g2221 488 SUPERFAMILY Ammonium transporter 17 429 - -
Cco10g2221 488 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0392 Cco-Chr4:12752039 Cco10g2221 Cco-Chr10:35225742 2.10E-29 dispersed
Cco08g1469 Cco-Chr8:26536280 Cco10g2221 Cco-Chr10:35225742 2.00E-151 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2221 K03320 - csv:101207321 905.975