Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2222 ATGGCTATGGCAGCTCCTCTGGCTCTTCTTTCTGTGTTCCTCCTTTTGGCTGCCCATTCAGTGCAGTCTTCATTTCCCTACCATGGATTCAACGATACAGGACTTGATCTTGAGGGAGCTTTTGTTTTGAAGCCATCTGGTGCATTGAGGCTCACCAATAGATCGCATAATGTTATCGGCCACGCGTTCTATCCATCTTCATTCCAGATGTTTGATCAAAGTTCTGACTCATTTCCGAATGTTTCATCATTCAGCACAACTTTTGTTTTTGCAATTGATCCTTCGAGCCCCGGCCAAGGCGGGTACGGCTTGGCCTTTGCCATAGCTCCATCAACCCAATTTGCAGGTGCAGACAGTGGACACTTTCTTGGATTGTTCAACTCTTCCAACAATGGTAACACTTCAAACCATATATTTGCTGTTGAATTTGACACTGTAAATGGGCATGATGAAGAAAGGAACACCAAAGGAAACCATATTGGAATCAACATCAATGGCATTTCATCAGTTGCATCCAAACCTGCTTCTTATTCCGACTATGGCGAAGCTCATGAACACGACTTGCAAATGGATTCTGGTGATCCTATCATCGCTTGGATTGAATATGATGGCCCCAACAGAATGGTGAACGTTACAATAGCTCCGTGGAAGCTTAAAAGAAAACCAACAAAGTCACTCCTTTCCCGTCGGATTGAACTGAAACCTGTTCTAAAGGAAAAAATGTTCGTCGGCTTCTCGGCTTCAACCGGAGATAAAACAAGCTCTCATTACATTTTGGGATGGAGTTTTGCAATGAATGGACCAGCGCCTCCCCTGAATTACTCTCTTCTTCCCAACCCACCAAAAGAGCAAGATTCTCTTTCTTCACCACCCAACTCCCACTTCAAGGTTTTTATAGCAGTTATATCTGTTGTAGCCATTCTAGGAATTCTTTTCTTAGCTTTCTGGTACAGAAAAACGTGGCAAACTGAGAGGCTTGAGGATTGGGAAAGAGACTGTCCTCACAGATTCCACTACAGAGACCTTTACACAGCAACAAAAGGATTTAAAAGTAGCGAGCTAATTGGAATTGGGGGATTTGGCTCAGTGTATAAAGGTCAGATACATTCAACTGGAATTGAAATTGCAGTGAAGAGAGTAAGAAGAAACTCAGGCCAAGGAATGAAAGAATTCGCAGCAGAAATCGAAAGCTTAGGTCGATTAAGACACAAGAACTTGGTGAATCTTCAAGGTTGGTGCAAGAAAAAGAACGATCTACTCATAGTTTACGATTATATTCCAAATGGAAGCCTCTACTCTCTTCTATATCATCCAAAAAACAACTATATATTGAATTGGAAACAAAGATTCAACATCCTCAAAGGAATTGCAGCAGGACTATTATACCTTCACGAAGAGTGGGAGCAAGTAGTGATCCATCGAGATGTGAAGCCAAGCAATGTTCTAATAGACGCCGACATGAATCCCCGATTGAGCGATTTCGGTCTAGCCAGGCAATACGACCACGACGAAGCATCACACACGACCGGCGTCGTCGGCACGATCGGCTACATAGCGCCGGAGTTGGTTCGTACAGGGAAGGCTTCAAAAAACACGGATGTATTTGGGTATGGAGTTCTGCTTCTGGAAGTGGCGTGTGGAAGAAAACCTCTGGAATCGGAACAGTTCATATTGGTGGATTGGGTGATGGAGCAGTATGAAAGCGGAGAAATTCTTAAGGCGGCTGATCCGAAGTTGAATTCAGTTTATGAGGATGAGGAGATGGAGATGGTTCTGCAATTGGGGCTTCTTTGTACTCACCAGATAGCCGAAGCTCGGCCGACGATGAGACAGGTGACGAGAATCCTTCACGGCGACGATCAAATTCCGGCGGTGGACGGCTGGGCTTGTTCTAAAAGTTACTCGAAATTTAACTCGAGAATGACTGAAGTGATTTCAGCAACTTCTTACCGTTCGTCGTCCATTGGCGATATTTCTTCAAGTTCCATAGATGCAGGCCGATAA 2004 44.21 MAMAAPLALLSVFLLLAAHSVQSSFPYHGFNDTGLDLEGAFVLKPSGALRLTNRSHNVIGHAFYPSSFQMFDQSSDSFPNVSSFSTTFVFAIDPSSPGQGGYGLAFAIAPSTQFAGADSGHFLGLFNSSNNGNTSNHIFAVEFDTVNGHDEERNTKGNHIGININGISSVASKPASYSDYGEAHEHDLQMDSGDPIIAWIEYDGPNRMVNVTIAPWKLKRKPTKSLLSRRIELKPVLKEKMFVGFSASTGDKTSSHYILGWSFAMNGPAPPLNYSLLPNPPKEQDSLSSPPNSHFKVFIAVISVVAILGILFLAFWYRKTWQTERLEDWERDCPHRFHYRDLYTATKGFKSSELIGIGGFGSVYKGQIHSTGIEIAVKRVRRNSGQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGSLYSLLYHPKNNYILNWKQRFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDADMNPRLSDFGLARQYDHDEASHTTGVVGTIGYIAPELVRTGKASKNTDVFGYGVLLLEVACGRKPLESEQFILVDWVMEQYESGEILKAADPKLNSVYEDEEMEMVLQLGLLCTHQIAEARPTMRQVTRILHGDDQIPAVDGWACSKSYSKFNSRMTEVISATSYRSSSIGDISSSSIDAGR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35234425 35236428 - CcPI632755_10g022220.1 Cco10g2222 191180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2222 667 Gene3D Transferase(Phosphotransferase) domain 1 426 635 - -
Cco10g2222 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 282 IPR013320 -
Cco10g2222 667 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2222 667 CDD STKc_IRAK 355 616 - -
Cco10g2222 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2222 667 CDD lectin_legume_LecRK_Arcelin_ConA 24 267 IPR001220 GO:0030246(InterPro)
Cco10g2222 667 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524(InterPro)
Cco10g2222 667 SUPERFAMILY Protein kinase-like (PK-like) 333 621 IPR011009 -
Cco10g2222 667 Pfam Protein kinase domain 350 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2222 667 PANTHER - 35 623 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Cco10g2222 667 FunFam L-type lectin-domain containing receptor kinase S.4 426 628 - -
Cco10g2222 667 FunFam serine/threonine-protein kinase PBS1-like 316 425 - -
Cco10g2222 667 Gene3D - 21 269 - -
Cco10g2222 667 SMART serkin_6 349 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2222 667 Pfam Legume lectin domain 23 275 IPR001220 GO:0030246(InterPro)
Cco10g2222 667 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cco10g2222 667 FunFam L-type lectin-domain containing receptor kinase V.9 21 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0771 Cco-Chr10:12687542 Cco10g2222 Cco-Chr10:35234425 6.20E-68 dispersed
Cco10g2120 Cco-Chr10:34452961 Cco10g2222 Cco-Chr10:35234425 2.60E-152 dispersed
Cco10g2222 Cco-Chr10:35234425 Cco07g1324 Cco-Chr7:27316064 3.30E-64 dispersed
Cco10g2222 Cco-Chr10:35234425 Cco10g2223 Cco-Chr10:35239310 1.60E-236 tandem
Cco08g0186 Cco-Chr8:2929504 Cco10g2222 Cco-Chr10:35234425 1.30E-254 transposed
Cco10g2222 Cco-Chr10:35234425 Cco11g0630 Cco-Chr11:6840316 2.90E-35 wgd
Cco10g2222 Cco-Chr10:35234425 Cco05g0980 Cco-Chr5:8590048 4.10E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87194 PF00069 Pkinase 8.70E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2222 - - - 0.0