Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2228 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGTTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAATTCACCAAATACGAACAGAAAATTCAAGAACCAACAATGGAAAAGCTGTTCTTCATACCTCATGGCTCTCTTTTTTTCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCACGAACTCATCGATCTAAAAGGAGCTTTGCATAGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGACAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCGACAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCAGTCCATGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGGACCGTCCCAGACTCTTGGGGAGGTCTTGGAAATAGAACTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCAATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCAAGAGATTTCCATCGGGGACAATAAGATCTCTGGGGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACACCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACCTCTTTCAATGTCTCCTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTATCGAATAAGTTCAATGCGAGCTCTTTCGTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGAAACCGCATCGCCACCACAGACTTAGTCTAAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAAGCATCGAGAAGGCAGCACCGGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCTGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGGACTCGGAAAAATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCCGGAGAAGCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCTCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2580 44.19 MGKSHNPLSEFQFQVHPLQFMQILAPKTADWCSNSPNTNRKFKNQQWKSCSSYLMALFFSHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHSWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNMISGAVPQSMGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRTCPLGVLTLDHNAIYGAIPASLSKLEWLQEISIGDNKISGAIPSEIGRLKRLRLLDLSNNTISGGFPSSFSNLSSLESLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNASSFVGNLQLCGFSTSTPCLPASSPHNITTPSTEVLKPHRHHRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARSIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35269785 35272554 - CcPI632755_10g022280.1 Cco10g2228 191186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2228 859 ProSiteProfiles Protein kinase domain profile. 571 842 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2228 859 FunFam Leucine-rich repeat receptor-like kinase 84 189 - -
Cco10g2228 859 SMART LRR_typ_2 195 219 IPR003591 -
Cco10g2228 859 SMART LRR_typ_2 147 170 IPR003591 -
Cco10g2228 859 SMART LRR_typ_2 343 367 IPR003591 -
Cco10g2228 859 SMART LRR_typ_2 171 194 IPR003591 -
Cco10g2228 859 SMART LRR_typ_2 319 342 IPR003591 -
Cco10g2228 859 SMART LRR_typ_2 415 438 IPR003591 -
Cco10g2228 859 SUPERFAMILY Protein kinase-like (PK-like) 575 843 IPR011009 -
Cco10g2228 859 Gene3D Ribonuclease Inhibitor 81 270 IPR032675 -
Cco10g2228 859 Gene3D Transferase(Phosphotransferase) domain 1 649 855 - -
Cco10g2228 859 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 297 847 IPR052451 -
Cco10g2228 859 Pfam Protein tyrosine and serine/threonine kinase 575 839 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2228 859 FunFam Leucine-rich repeat receptor-like protein kinase 557 647 - -
Cco10g2228 859 CDD STKc_IRAK 577 842 - -
Cco10g2228 859 Pfam Leucine Rich Repeat 417 438 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 Pfam Leucine Rich Repeat 222 241 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 Pfam Leucine Rich Repeat 396 415 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 274 340 - -
Cco10g2228 859 Gene3D Phosphorylase Kinase; domain 1 577 648 - -
Cco10g2228 859 Gene3D Ribonuclease Inhibitor 276 357 IPR032675 -
Cco10g2228 859 FunFam Leucine-rich repeat receptor protein kinase EMS1 190 273 - -
Cco10g2228 859 PRINTS Leucine-rich repeat signature 319 332 - -
Cco10g2228 859 PRINTS Leucine-rich repeat signature 198 211 - -
Cco10g2228 859 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 341 460 - -
Cco10g2228 859 Pfam Leucine rich repeat N-terminal domain 83 121 IPR013210 -
Cco10g2228 859 SUPERFAMILY L domain-like 108 452 - -
Cco10g2228 859 Gene3D Ribonuclease Inhibitor 358 464 IPR032675 -
Cco10g2228 859 Pfam Leucine rich repeat 148 208 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 Pfam Leucine rich repeat 298 356 IPR001611 GO:0005515(InterPro)
Cco10g2228 859 FunFam Pollen receptor-like kinase 1 648 853 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2228 Cco-Chr10:35269785 Cco11g0287 Cco-Chr11:2900088 2.40E-75 dispersed
Cco03g0830 Cco-Chr3:9174052 Cco10g2228 Cco-Chr10:35269785 8.80E-55 transposed
Cco03g1462 Cco-Chr3:29228324 Cco10g2228 Cco-Chr10:35269785 2.40E-53 transposed
Cco04g1685 Cco-Chr4:32013661 Cco10g2228 Cco-Chr10:35269785 1.90E-46 transposed
Cco07g0495 Cco-Chr7:6084952 Cco10g2228 Cco-Chr10:35269785 2.10E-164 transposed
Cco09g0907 Cco-Chr9:8522635 Cco10g2228 Cco-Chr10:35269785 1.20E-67 transposed
Cco10g2228 Cco-Chr10:35269785 Cco07g0463 Cco-Chr7:5534346 4.30E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87196 PF07714 PK_Tyr_Ser-Thr 4.00E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2228 - - - 0.0