Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2236 ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTTCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCAACTACTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGCAAAAATCAGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGGTTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAAGCTAAGAGATGGAAGGGGGAAAATGAGAACGAGGGATATTGTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATCCTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTTCACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCACTCTTTCCCGGCAAATTTTCTGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATAGGAGCAGAAGCATCATCATTCCCATTTCAAACACCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAA 1428 45.66 MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLQPPPFPMSSSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQQKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEPEAKRWKGENENEGYCGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPSPTNIPMPVRPSAIGSHSFPANFLATFQPANLAMSEIGAEASSFPFQTPQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35317552 35320265 + CcPI632755_10g022360.1 Cco10g2236 191194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2236 475 FunFam WRKY transcription factor 159 229 - -
Cco10g2236 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 383 IPR044810 GO:0003700(InterPro)
Cco10g2236 475 SUPERFAMILY WRKY DNA-binding domain 165 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 SMART WRKY_cls 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 SMART WRKY_cls 318 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 MobiDBLite consensus disorder prediction 276 290 - -
Cco10g2236 475 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 MobiDBLite consensus disorder prediction 1 24 - -
Cco10g2236 475 MobiDBLite consensus disorder prediction 228 275 - -
Cco10g2236 475 Gene3D WRKY domain 305 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 Gene3D WRKY domain 156 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g2236 475 MobiDBLite consensus disorder prediction 219 299 - -
Cco10g2236 475 FunFam WRKY transcription factor 33 305 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0014 Cco-Chr3:167468 Cco10g2236 Cco-Chr10:35317552 2.00E-89 dispersed
Cco10g2236 Cco-Chr10:35317552 Cco11g0470 Cco-Chr11:5016895 1.70E-65 dispersed
Cco10g2236 Cco-Chr10:35317552 Cco05g2663 Cco-Chr5:34686077 1.70E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60201 PF03106 WRKY 9.50E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2236 K13424 - csv:101205651 789.26