Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2256 ATGCGTTTTAGATGCTTGTTCAACTACGGAAATAAGAATCAAGTTCCAGAGTCCAAGTTAGATAAAGACCCCATGGATTTTTGTTATTGCTTTCTTTTCTCGCGGATAAAGTTTCCTCGGAAATTTTGGCGTCAACTATGTTCTACTGATTGCAAACCAGGAAATGTGAATGACTGTATGAGTTGTAACGAGAAGAATAGAGGGGTAGATGATAGGGAAACTGAGCAGCCAGTTTTTAGGAACGCTGTCGAGGCACAACGGATACCAGCCATCCAGAATGGATCCATAACGGCCCAACAGTTGACGATTGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGTGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCTCTTGAAAATCGTTTTGCCCGTGAAGTCAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGATCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCTGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGTGACGTACCTCCCGATTTAGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTGTTTACACTCCCAACTCCTTCACCATCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATGA 1308 43.27 MRFRCLFNYGNKNQVPESKLDKDPMDFCYCFLFSRIKFPRKFWRQLCSTDCKPGNVNDCMSCNEKNRGVDDRETEQPVFRNAVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDVPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPTPSPSSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35461495 35465229 + CcPI632755_10g022560.1 Cco10g2256 191214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2256 435 CDD STKc_MAP3K-like 120 375 - -
Cco10g2256 435 PANTHER SERINE-THREONINE PROTEIN KINASE 90 376 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco10g2256 435 FunFam Kinase suppressor of Ras 1 103 193 - -
Cco10g2256 435 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 PRINTS Tyrosine kinase catalytic domain signature 346 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 MobiDBLite consensus disorder prediction 385 409 - -
Cco10g2256 435 ProSiteProfiles Protein kinase domain profile. 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 SMART serkin_6 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 ProSitePatterns Protein kinases ATP-binding region signature. 120 141 IPR017441 GO:0005524(InterPro)
Cco10g2256 435 Pfam Protein tyrosine and serine/threonine kinase 116 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2256 435 Gene3D Transferase(Phosphotransferase) domain 1 197 406 - -
Cco10g2256 435 SUPERFAMILY Protein kinase-like (PK-like) 113 404 IPR011009 -
Cco10g2256 435 Gene3D Phosphorylase Kinase; domain 1 102 193 - -
Cco10g2256 435 FunFam serine/threonine-protein kinase HT1 195 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2141 Cco-Chr9:35784739 Cco10g2256 Cco-Chr10:35461495 1.20E-112 dispersed
Cco10g1367 Cco-Chr10:26684207 Cco10g2256 Cco-Chr10:35461495 8.40E-115 dispersed
Cco10g2256 Cco-Chr10:35461495 Cco11g1147 Cco-Chr11:22402226 1.30E-64 dispersed
Cco10g2256 Cco-Chr10:35461495 Cco06g1942 Cco-Chr6:29656891 5.50E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87197 PF07714 PK_Tyr_Ser-Thr 8.90E-62 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2256 - - - 0.0