Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g2256 | ATGCGTTTTAGATGCTTGTTCAACTACGGAAATAAGAATCAAGTTCCAGAGTCCAAGTTAGATAAAGACCCCATGGATTTTTGTTATTGCTTTCTTTTCTCGCGGATAAAGTTTCCTCGGAAATTTTGGCGTCAACTATGTTCTACTGATTGCAAACCAGGAAATGTGAATGACTGTATGAGTTGTAACGAGAAGAATAGAGGGGTAGATGATAGGGAAACTGAGCAGCCAGTTTTTAGGAACGCTGTCGAGGCACAACGGATACCAGCCATCCAGAATGGATCCATAACGGCCCAACAGTTGACGATTGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGTGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCTCTTGAAAATCGTTTTGCCCGTGAAGTCAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATTTGTTGCTTACTGCAAATCAAAGATCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCTGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGTGACGTACCTCCCGATTTAGCATTTATAGTACAGTCGTGTTGGGTTGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTGTTTACACTCCCAACTCCTTCACCATCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATGA | 1308 | 43.27 | MRFRCLFNYGNKNQVPESKLDKDPMDFCYCFLFSRIKFPRKFWRQLCSTDCKPGNVNDCMSCNEKNRGVDDRETEQPVFRNAVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDVPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPTPSPSSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35461495 | 35465229 | + | CcPI632755_10g022560.1 | Cco10g2256 | 191214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g2256 | 435 | CDD | STKc_MAP3K-like | 120 | 375 | - | - | |
Cco10g2256 | 435 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 90 | 376 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco10g2256 | 435 | FunFam | Kinase suppressor of Ras 1 | 103 | 193 | - | - | |
Cco10g2256 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 190 | 203 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 302 | 324 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 346 | 368 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | PRINTS | Tyrosine kinase catalytic domain signature | 228 | 246 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | MobiDBLite | consensus disorder prediction | 385 | 409 | - | - | |
Cco10g2256 | 435 | ProSiteProfiles | Protein kinase domain profile. | 114 | 379 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | SMART | serkin_6 | 114 | 379 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 234 | 246 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 120 | 141 | IPR017441 | GO:0005524(InterPro) | |
Cco10g2256 | 435 | Pfam | Protein tyrosine and serine/threonine kinase | 116 | 375 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g2256 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 197 | 406 | - | - | |
Cco10g2256 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 113 | 404 | IPR011009 | - | |
Cco10g2256 | 435 | Gene3D | Phosphorylase Kinase; domain 1 | 102 | 193 | - | - | |
Cco10g2256 | 435 | FunFam | serine/threonine-protein kinase HT1 | 195 | 396 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g2141 | Cco-Chr9:35784739 | Cco10g2256 | Cco-Chr10:35461495 | 1.20E-112 | dispersed | |
Cco10g1367 | Cco-Chr10:26684207 | Cco10g2256 | Cco-Chr10:35461495 | 8.40E-115 | dispersed | |
Cco10g2256 | Cco-Chr10:35461495 | Cco11g1147 | Cco-Chr11:22402226 | 1.30E-64 | dispersed | |
Cco10g2256 | Cco-Chr10:35461495 | Cco06g1942 | Cco-Chr6:29656891 | 5.50E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87197 | PF07714 | PK_Tyr_Ser-Thr | 8.90E-62 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g2256 | - | - | - | 0.0 |