Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2265 ATGATCACGGTGTGGCTTTGTTATGCTTTATTTGTTGTCGAGAAGAACAGCTTGAAGATAACTTCCCCAGACTCCATCAAGGGTGTTTACGAATGTGCGATTGGGAATTTTGGGGTTCCTGAATATGGAGGCACAATGACTGGCATCGTGCATTATCCTAAAGCCAATCAGAAGGCATGCAAGAGCTTTGAGGATGCCGGTATCTCTTTCAAGTCCAAACCTGGAAGTCTCCCTACCTTTGTTCTTGCCGATCGAGGAGATTGTTACTTCACCACGAAGGCGTGGAATGCACAAAATGGTGGAGCTGCAGCAATTCTTGTTGCAGATGATAGACTTGAACCGTTGATTACCATGGACTCTCCAGAACAAGAGAAGGCAGATGCCAATTACCTAAAAGACATTACCATACCTTCTGCTCTTATTAGCAAAAGCTTGGGAGATGCCATCAAGAAAGCTCTATCTAGTGGAGAGATGGTTAATATAAATCTTGATTGGACAGAAGCTCTTCCACATCCTGATGATCGAGTTGAGTATGAATTTTGGACAAATAGTAATGATGAGTGTGGGCCAAAGTGTGATAGTCAGATTGAGTTTGTGAAAAACTTCAAAGGAGCTGCTCAGACGCTTGAGCAGAAAGGGTACACTCAATTTACTCCCCATTATATAACTTGGTATTGCCCAGATGCTTTTACTTTGAGTAAGCAATGCAAATCTCAATGCATCAATCATGGGAGATACTGTGCACCAGATCCCGAACAGGATTTCAGTAAAGGATATGATGGAAAGCATGTGGTTGTTCAAAATCTACGCCAAATCTGTTTCTTTAAAGTTGCAAATGAATCTGGGAAACCTTGGCTTTGGTGGGATTATGTCACTGACTTTTCAATCCGTTGTCCTATGAAAGAAAACAAGTACGACGAGGAATGTGCCAATGAAGTTATTAAATCGTTTGGTATGGATCTTAACAAGATAAAAGAATGTATTGGAGATCCAGAGGCAGATGTGGAGAACCCAATTCTTAAAGCTGAACAGGATGCACAGATTGGTAGGGGTTCCCGTGGAGATGTTACTATATTGCCAACTCTTGTTATAAATAACAGACAGTATAGAGGCAAGCTGGATAAAGGAGCAGTTCTGAAAGGCATTTGTTCTGGTTTTCAGGAGACAACAGAGCCTGCAATTTGTTTAACTGAAGACGTGGAAACAAATGAGTGTTTGACAAATAATGGTGGTTGCTGGCACAATAAGGATGCAAATGTTTCTGCATGCAGGGATACATTTCGAGGAAGAGTTTGTGAATGTCCTACTGTTCGAGGTGTGAAGTTCATTGGAGATGGCTATACTCACTGCGAACCGTCAGGAGCTTTACGCTGTGAAATAAATAATGGGGGTTGTTGGAAGGGCACCCAAGATGGAAGAACTTACTCTGCCTGTTCTGATGACCATACAAAGGGCTGCAAGTGCCCTCCAGGATTTAAAGGCGATGGAGTCCGCAATTGTGAAGATGTGGATGAGTGCAAGGAGAAGCTAGCATGCCAGTGCCCAGAGTGCAAATGTAAGAATACATGGGGCAGCTATGATTGCAGTTGCAGAAATGGTTTGCTATATATGCACGAACATGATACATGTATAGGTAGCATGGGAAACACTGTGACAAGCTGGAGCGTTGTAAAGATTATTGTCCTTGTGTTAGCCATCACTGGGATCGGGGGATATGCAGTTTACAAGTACAGAATCCGGAGGTATATGGATTCTGAGATACGGGCTATCATGGCTCAATATATGCCCTTGGACAATCAAGGAGAGACTTCTAATCAGGTTGATGCTGCAGCAGGTGTGTTGATGTGCGTGAGGATCGAGATCCTCTTTCTTAATAAAAGGTTGGGCTGGATGCCAAATTCGGCTGCATTTAAGCATTTGCCATTTGGTTCCTCTGGGAAGAGGCTTGATTGGAGAAGCATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAGCTCCTGCTTCCGTTTCTGCTTTGGACACTGTTTTCAACGACGACGTTTTGGGATTGATAGTGTTCAAAGCTGGCCTTCAAGACCCTATGGGTAAATTGGTCACATGGAACGAAGACGATGAAACTCCCTGCAATTGGTTTGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATTGATCGTGGACTCCTAAGGTTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCTCACCTTGTAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGATTCTTAACTTCTCCTCCAACCACCTTTCTGGAAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTCTGGATTTCTCTATCAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTACTTCTAAAATCAATCGATTTTAGTGAGAATATCCTTTCTGGTGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAGTTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTACATGGATCTTTAGGGCAGCTATGCCAAGTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCCCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCTAGAAACCATCTCGTGGGTTCTATTCCGGGGAGCATTGGTGAACTAAAATCAGCATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGCATCCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGCTGAAGAAGAACTCCCTCACTGGGGAAATCCCAGTCAACATTGACACATGCTCCTTGTTAACATCATTGATTCTTTCTCACAACAACCTAACAGGCTCAATTCCTGCTTCCCTGGCAAATCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACAAAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATTGTCCTAAACCCAAATTCTTCTGATACCAATGGAAATTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATAATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCCGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTGTCTGCTGGGGAGGAGTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCGTCATGTTTTCCGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTCGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAGTATCATTCACTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGCTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTGTAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCGAACTTCCGTATTGAAGAGGCCATTCCTGTAATGAAACTAGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTAACGAGGAGTTGGAATGA 4842 43.37 MITVWLCYALFVVEKNSLKITSPDSIKGVYECAIGNFGVPEYGGTMTGIVHYPKANQKACKSFEDAGISFKSKPGSLPTFVLADRGDCYFTTKAWNAQNGGAAAILVADDRLEPLITMDSPEQEKADANYLKDITIPSALISKSLGDAIKKALSSGEMVNINLDWTEALPHPDDRVEYEFWTNSNDECGPKCDSQIEFVKNFKGAAQTLEQKGYTQFTPHYITWYCPDAFTLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKHVVVQNLRQICFFKVANESGKPWLWWDYVTDFSIRCPMKENKYDEECANEVIKSFGMDLNKIKECIGDPEADVENPILKAEQDAQIGRGSRGDVTILPTLVINNRQYRGKLDKGAVLKGICSGFQETTEPAICLTEDVETNECLTNNGGCWHNKDANVSACRDTFRGRVCECPTVRGVKFIGDGYTHCEPSGALRCEINNGGCWKGTQDGRTYSACSDDHTKGCKCPPGFKGDGVRNCEDVDECKEKLACQCPECKCKNTWGSYDCSCRNGLLYMHEHDTCIGSMGNTVTSWSVVKIIVLVLAITGIGGYAVYKYRIRRYMDSEIRAIMAQYMPLDNQGETSNQVDAAAGVLMCVRIEILFLNKRLGWMPNSAAFKHLPFGSSGKRLDWRSMLFKLFLILVLALAPASVSALDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLVNLQVIDFSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGLQSLDFSINLLEGQIPPGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLSLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWIFRAAMPSVPFSSYRLGENLSSPAPFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSAYALDFSDNQLNGSIPAEIGGAISLKELRLKKNSLTGEIPVNIDTCSLLTSLILSHNNLTGSIPASLANLSNLEDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISQNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSAGEEFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNSIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTVTEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEQCVDERLQSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVNEELE 1613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35515033 35526212 - CcPI632755_10g022650.1 Cco10g2265 191223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2265 1613 Pfam Leucine rich repeat N-terminal domain 679 718 IPR013210 -
Cco10g2265 1613 Pfam Protein tyrosine and serine/threonine kinase 1332 1598 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2265 1613 SUPERFAMILY PA domain 80 156 IPR046450 -
Cco10g2265 1613 ProSiteProfiles Protein kinase domain profile. 1330 1602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2265 1613 Pfam PA domain 52 149 IPR003137 -
Cco10g2265 1613 Gene3D Ribonuclease Inhibitor 678 953 IPR032675 -
Cco10g2265 1613 Gene3D Transferase(Phosphotransferase) domain 1 1407 1612 - -
Cco10g2265 1613 CDD EGF_CA 502 533 - -
Cco10g2265 1613 FunFam Vacuolar-sorting receptor 1 8 172 - -
Cco10g2265 1613 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1407 1608 - -
Cco10g2265 1613 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1324 1406 - -
Cco10g2265 1613 Pfam Leucine Rich Repeat 940 962 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 771 790 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 820 842 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 748 769 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 918 938 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 1131 1152 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 1154 1176 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 1058 1080 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Pfam Leucine Rich Repeat 1035 1056 IPR001611 GO:0005515(InterPro)
Cco10g2265 1613 Gene3D Ribonuclease Inhibitor 954 1225 IPR032675 -
Cco10g2265 1613 SUPERFAMILY Protein kinase-like (PK-like) 1334 1602 IPR011009 -
Cco10g2265 1613 Gene3D - 8 172 - -
Cco10g2265 1613 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 659 1600 IPR050647 -
Cco10g2265 1613 FunFam vacuolar-sorting receptor 1 395 451 - -
Cco10g2265 1613 Gene3D Phosphorylase Kinase; domain 1 1319 1406 - -
Cco10g2265 1613 Gene3D Laminin 395 445 - -
Cco10g2265 1613 SUPERFAMILY L domain-like 696 1007 - -
Cco10g2265 1613 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 958 1226 - -
Cco10g2265 1613 SMART egfca_6 502 544 IPR001881 GO:0005509(InterPro)
Cco10g2265 1613 ProSitePatterns Protein kinases ATP-binding region signature. 1336 1359 IPR017441 GO:0005524(InterPro)
Cco10g2265 1613 SMART LRR_typ_2 1152 1175 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 769 793 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 842 865 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 1056 1080 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 1176 1200 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 745 768 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 866 890 IPR003591 -
Cco10g2265 1613 SMART LRR_typ_2 938 962 IPR003591 -
Cco10g2265 1613 SUPERFAMILY L domain-like 949 1207 - -
Cco10g2265 1613 ProSitePatterns Calcium-binding EGF-like domain signature. 502 528 IPR018097 GO:0005509(InterPro)
Cco10g2265 1613 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 679 957 - -
Cco10g2265 1613 CDD STKc_IRAK 1336 1602 - -
Cco10g2265 1613 Gene3D Laminin 455 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0748 Cco-Chr2:7784152 Cco10g2265 Cco-Chr10:35515033 3.40E-276 dispersed
Cco07g0542 Cco-Chr7:6960531 Cco10g2265 Cco-Chr10:35515033 2.00E-22 dispersed
Cco08g0484 Cco-Chr8:12257461 Cco10g2265 Cco-Chr10:35515033 5.60E-07 dispersed
Cco10g0333 Cco-Chr10:3912633 Cco10g2265 Cco-Chr10:35515033 2.50E-83 dispersed
Cco10g1015 Cco-Chr10:21799168 Cco10g2265 Cco-Chr10:35515033 6.00E-265 dispersed
Cco10g2265 Cco-Chr10:35515033 Cco11g1766 Cco-Chr11:30386896 2.30E-50 dispersed
Cco07g1657 Cco-Chr7:30624312 Cco10g2265 Cco-Chr10:35515033 1.30E-22 transposed
Cco10g0882 Cco-Chr10:18481512 Cco10g2265 Cco-Chr10:35515033 7.10E-12 transposed
Cco10g2265 Cco-Chr10:35515033 Cco11g0578 Cco-Chr11:6196314 3.00E-183 wgd
Cco10g2265 Cco-Chr10:35515033 Cco05g0925 Cco-Chr5:8070331 1.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87199 PF07714 PK_Tyr_Ser-Thr 2.90E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2265 - - - 0.0