Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g2277 ATGTCACTTGTGCAAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGACACAACCGGTTCTTTCACTGATCCCCGTGATTCTGCGGCGCTGGAATCCCTGAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGGCTTGCATCAATTCAAGAGTCACGGCACTGAGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCCAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGGAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGAATTCCCAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACACTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAATTTTTCTGGGAATATCCCACCGACACTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTAGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCTCCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCATTGAATTTGGGTCAATTCGAGGACCTGTGCCAGAAGGAGTGTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAATAATGCATTTAGTGACACATTTAATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATACACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTCTCAAATACAAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCAACCAGCCTTGCCAGTTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACACCGGGTTCAGTTTCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAGATGCAAATTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGGTTTTGCAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCATTCTAGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGACAGTGGGGGCGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACAGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGACTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGCGAAAAGGGACACGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGACTCAACAATTGACGGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAAGAATATTATGGTCTGAAGCAGATAATGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGAATTAATACGAATACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTATAATGATTCTATACCAAAAAAGGATGCTAACGACAGCAATGCTTTTGATTACAGTGGTGGATACACTCATTCGACAAAAGTGGAGCCCAAATAG 2901 41.92 MSLVQTLLLFAFFYAGIDTTGSFTDPRDSAALESLKNEWQNTPPSWGASNDPCGAPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSNSQSSGLDLLLKAKHFHFNKNQLSGSISPKLFSSEMVLIHILFDGNNFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYLDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSIRGPVPEGVFSLPQIQQIKLKNNAFSDTFNMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQIALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTARGTSISPGVIIGVAIGCAFLILGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIMDVTIINNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDSIPKKDANDSNAFDYSGGYTHSTKVEPK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35617199 35625499 + CcPI632755_10g022770.1 Cco10g2277 191235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g2277 966 Gene3D Transferase(Phosphotransferase) domain 1 707 930 - -
Cco10g2277 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2277 966 MobiDBLite consensus disorder prediction 912 927 - -
Cco10g2277 966 CDD STKc_IRAK 637 905 - -
Cco10g2277 966 FunFam Predicted protein 186 406 - -
Cco10g2277 966 FunFam Leucine-rich repeat protein kinase family protein 600 706 - -
Cco10g2277 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g2277 966 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cco10g2277 966 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Cco10g2277 966 Pfam Leucine Rich Repeat 289 312 IPR001611 GO:0005515(InterPro)
Cco10g2277 966 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
Cco10g2277 966 PANTHER RECEPTOR-LIKE PROTEIN 55 39 903 - -
Cco10g2277 966 SMART serkin_6 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g2277 966 SUPERFAMILY Protein kinase-like (PK-like) 616 916 IPR011009 -
Cco10g2277 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524(InterPro)
Cco10g2277 966 Gene3D Ribonuclease Inhibitor 25 217 IPR032675 -
Cco10g2277 966 Gene3D Ribonuclease Inhibitor 284 423 IPR032675 -
Cco10g2277 966 SUPERFAMILY L domain-like 43 411 - -
Cco10g2277 966 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 707 919 - -
Cco10g2277 966 MobiDBLite consensus disorder prediction 912 966 - -
Cco10g2277 966 Gene3D Ribonuclease Inhibitor 218 283 IPR032675 -
Cco10g2277 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Cco10g2277 966 FunFam Leucine-rich repeat family protein 27 183 - -
Cco10g2277 966 Pfam Protein tyrosine and serine/threonine kinase 633 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0003 Cco-Chr3:48484 Cco10g2277 Cco-Chr10:35617199 2.40E-92 dispersed
Cco04g0794 Cco-Chr4:23232101 Cco10g2277 Cco-Chr10:35617199 1.70E-94 dispersed
Cco10g1305 Cco-Chr10:26022845 Cco10g2277 Cco-Chr10:35617199 0.00E+00 dispersed
Cco10g2277 Cco-Chr10:35617199 Cco11g0541 Cco-Chr11:5714802 1.40E-71 dispersed
Cco02g0002 Cco-Chr2:34621 Cco10g2277 Cco-Chr10:35617199 2.50E-238 transposed
Cco10g2277 Cco-Chr10:35617199 Cco04g0807 Cco-Chr4:23394568 2.20E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87202 PF07714 PK_Tyr_Ser-Thr 5.80E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g2277 - - - 0.0