Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0004 | ATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCATTGACTATGGAAGGATGA | 510 | 48.24 | MDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAESSLTMEG | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 46916 | 48082 | - | CcPI632755_11g000040.1 | Cco11g0004 | 191240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0004 | 169 | Pfam | Auxin responsive protein | 57 | 146 | IPR003676 | GO:0009733(InterPro) | |
| Cco11g0004 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 20 | 147 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco04g0195 | Cco-Chr4:4677820 | Cco11g0004 | Cco-Chr11:46916 | 2.00E-09 | dispersed | |
| Cco04g1785 | Cco-Chr4:32756617 | Cco11g0004 | Cco-Chr11:46916 | 1.60E-16 | dispersed | |
| Cco05g2898 | Cco-Chr5:36531916 | Cco11g0004 | Cco-Chr11:46916 | 9.20E-19 | dispersed | |
| Cco08g0902 | Cco-Chr8:20917853 | Cco11g0004 | Cco-Chr11:46916 | 5.60E-14 | dispersed | |
| Cco08g1625 | Cco-Chr8:27774133 | Cco11g0004 | Cco-Chr11:46916 | 4.70E-16 | dispersed | |
| Cco10g1874 | Cco-Chr10:32348667 | Cco11g0004 | Cco-Chr11:46916 | 1.80E-13 | dispersed | |
| Cco11g0004 | Cco-Chr11:46916 | Cco04g1227 | Cco-Chr4:27648103 | 3.00E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0004 | K14488 | - | csv:101207913 | 327.405 |