Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0011 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCCTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCAGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCATCATAACAACAATAACAATAACAACAGCAGCAGCAACAACAAGAAGCATATCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCATACAACATGCTCGGTGGGGGCGGCGGGCACTCGGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGGAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACAGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATGATTTCCCCTTCCCATTCTCCTAATCCCTTGAATTAA 918 51.09 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSSNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDMISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 140881 141798 + CcPI632755_11g000110.1 Cco11g0011 191247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0011 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Cco11g0011 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Cco11g0011 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cco11g0011 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Cco11g0011 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cco11g0011 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco11g0011 305 Gene3D - 220 292 - -
Cco11g0011 305 MobiDBLite consensus disorder prediction 201 221 - -
Cco11g0011 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1610 Cco-Chr4:31428886 Cco11g0011 Cco-Chr11:140881 4.00E-47 dispersed
Cco08g1302 Cco-Chr8:24790446 Cco11g0011 Cco-Chr11:140881 2.00E-46 dispersed
Cco09g2029 Cco-Chr9:34545941 Cco11g0011 Cco-Chr11:140881 4.90E-17 dispersed
Cco10g0813 Cco-Chr10:16698730 Cco11g0011 Cco-Chr11:140881 1.90E-36 dispersed
Cco10g1496 Cco-Chr10:28049765 Cco11g0011 Cco-Chr11:140881 3.20E-35 dispersed
Cco11g0011 Cco-Chr11:140881 Cco08g1684 Cco-Chr8:28265445 2.50E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60205 PF04770 ZF-HD_dimer 4.60E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0011 - - - 0.0