Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0021 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACCATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAGGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGTGAAAACGACGCCGGATCTGAATAACTGGCTAAGTGCGGTGATGTCATATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAAGACCGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAACGATGGGGTGCCAACTTGGATGAATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTACGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACACCCAAGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGATCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCTGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGCTACAAGGTGATTGGTAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1788 50.56 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTVKTTPDLNNWLSAVMSYHETCVDGFPEGKMKTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMNSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYTQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMIRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIGKDEAAKFTIGTFLELDWIESSSAPVHVGLF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 278329 280341 + CcPI632755_11g000210.1 Cco11g0021 191257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0021 595 MobiDBLite consensus disorder prediction 51 77 - -
Cco11g0021 595 Pfam Pectinesterase 285 579 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco11g0021 595 Pfam Plant invertase/pectin methylesterase inhibitor 84 232 IPR006501 GO:0004857(InterPro)
Cco11g0021 595 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Cco11g0021 595 PANTHER PECTINESTERASE 26 585 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco11g0021 595 NCBIfam pectinesterase inhibitor domain 82 236 IPR006501 GO:0004857(InterPro)
Cco11g0021 595 SUPERFAMILY Pectin lyase-like 281 579 IPR011050 -
Cco11g0021 595 Coils Coil 155 175 - -
Cco11g0021 595 Gene3D - 279 594 IPR012334 -
Cco11g0021 595 CDD PMEI-like_3 88 238 - -
Cco11g0021 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 237 IPR035513 -
Cco11g0021 595 MobiDBLite consensus disorder prediction 51 74 - -
Cco11g0021 595 FunFam Pectinesterase 81 237 - -
Cco11g0021 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 236 IPR035513 -
Cco11g0021 595 SMART PMEI_2 80 232 IPR006501 GO:0004857(InterPro)
Cco11g0021 595 FunFam Pectinesterase 279 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0751 Cco-Chr1:7944395 Cco11g0021 Cco-Chr11:278329 1.70E-141 dispersed
Cco01g0752 Cco-Chr1:7957739 Cco11g0021 Cco-Chr11:278329 1.10E-137 dispersed
Cco03g1799 Cco-Chr3:32636494 Cco11g0021 Cco-Chr11:278329 1.50E-137 dispersed
Cco05g0741 Cco-Chr5:6085978 Cco11g0021 Cco-Chr11:278329 4.80E-136 dispersed
Cco09g0858 Cco-Chr9:8087328 Cco11g0021 Cco-Chr11:278329 2.90E-92 dispersed
Cco10g0003 Cco-Chr10:107308 Cco11g0021 Cco-Chr11:278329 4.30E-101 dispersed
Cco11g0021 Cco-Chr11:278329 Cco11g1499 Cco-Chr11:27818807 3.60E-78 dispersed
Cco11g0021 Cco-Chr11:278329 Cco06g0497 Cco-Chr6:5453474 2.60E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0021 - - - 0.0