Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0036 ATGTCCTTTTCAGCTGCCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAGATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGGTGGGCGAATTCTGAATGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCATGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTCCTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAACCCATTGAAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTGTTTCAACGCCTAAAATGGTCTGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCGTCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGCGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACCGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTTTGCAAACCAGATTCCGATACAATTGCCAACCATACGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 45.41 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSIMRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSPAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPVSTPKMVCEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 420483 429835 - CcPI632755_11g000360.1 Cco11g0036 191272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0036 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cco11g0036 678 MobiDBLite consensus disorder prediction 362 386 - -
Cco11g0036 678 FunFam Auxin response factor 548 642 - -
Cco11g0036 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cco11g0036 678 FunFam Auxin response factor 126 230 - -
Cco11g0036 678 Gene3D - 548 642 - -
Cco11g0036 678 Gene3D - 291 364 - -
Cco11g0036 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Cco11g0036 678 FunFam Auxin response factor 291 363 - -
Cco11g0036 678 Pfam AUX/IAA family 600 644 IPR033389 -
Cco11g0036 678 Pfam AUX/IAA family 553 589 IPR033389 -
Cco11g0036 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cco11g0036 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cco11g0036 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco11g0036 678 Gene3D - 125 230 IPR015300 -
Cco11g0036 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cco11g0036 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Cco11g0036 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Cco11g0036 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2271 Cco-Chr4:36246732 Cco11g0036 Cco-Chr11:420483 1.40E-13 dispersed
Cco06g2035 Cco-Chr6:30315379 Cco11g0036 Cco-Chr11:420483 2.30E-177 dispersed
Cco07g1226 Cco-Chr7:26146254 Cco11g0036 Cco-Chr11:420483 1.10E-174 dispersed
Cco11g0036 Cco-Chr11:420483 Cco11g1173 Cco-Chr11:22869457 3.10E-17 dispersed
Cco11g0036 Cco-Chr11:420483 Cco09g0944 Cco-Chr9:8866102 6.40E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60206 PF02362 B3 1.50E-19 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0036 K14486 - csv:101204612 1313.9