Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0056 ATGAATTCAGTCTCAGTGTTTGTATTTTCACTTTGCAGTAAAAGTCCACAAAGATTTATGGAGGGAGGACAAGACGATGCCGGAAATGGGTTCACGGCGGCCACTGGATCAAATCATCCGAGGCCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGCGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGCGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACAGTAAGCACTGGCGAGGATGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCTGCTAACGGCGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGCGACAACGCAGGAACAAAGAGCAGAATTGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCGGTTTCTGCTTTTCCAATCTCTAGTGTGGAACCAAAATCATACAAGACGACGACGACGACAACGACAATGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGCCAGCCAACTGATATCAATGTATCATTAACAAGTGGCTAA 978 49.39 MNSVSVFVFSLCSKSPQRFMEGGQDDAGNGFTAATGSNHPRPEAAAPPPEGGGPVGSSAAAGKKKRGRPRKYGPDGKLNAAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRIGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTTMTSSFRAETWSPLVPDLRSQPTDINVSLTSG 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 602073 605756 - CcPI632755_11g000560.1 Cco11g0056 191292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0056 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Cco11g0056 325 ProSiteProfiles PPC domain profile profile. 134 279 IPR005175 -
Cco11g0056 325 MobiDBLite consensus disorder prediction 20 90 - -
Cco11g0056 325 Gene3D - 139 270 - -
Cco11g0056 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 286 IPR039605 GO:0003680(InterPro)
Cco11g0056 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 259 - -
Cco11g0056 325 CDD DUF296 138 229 IPR005175 -
Cco11g0056 325 FunFam AT-hook motif nuclear-localized protein 1-like 139 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0263 Cco-Chr5:2106531 Cco11g0056 Cco-Chr11:602073 3.30E-76 dispersed
Cco05g0898 Cco-Chr5:7771166 Cco11g0056 Cco-Chr11:602073 1.50E-64 dispersed
Cco06g0387 Cco-Chr6:4285278 Cco11g0056 Cco-Chr11:602073 2.10E-54 dispersed
Cco09g1230 Cco-Chr9:12522926 Cco11g0056 Cco-Chr11:602073 2.10E-31 dispersed
Cco11g0056 Cco-Chr11:602073 Cco11g1956 Cco-Chr11:32080088 6.20E-48 dispersed
Cco11g0056 Cco-Chr11:602073 Cco01g0365 Cco-Chr1:3642339 5.20E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0056 - - - 0.0