Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0066 ATGATTGATGGTCTCTATTACTTTGATGAAGTTTCAACTAGTCATAAAAAGATTCAAGGCTTGAGTAGTGGAATACTGAATGATGGAAGAGTAATTGCTGTAAAGCAACTATCTGTAAAATCTGACCAAGGAAGGAACCAGTTTGTGGCTGAGATTTCTATAATATCCGCCGTGCAACATCGCAACCTTGTGAAGTTGCATGGATGTTGCATTGAGGGCCACAATCGTCTCCTTGTTTATGAGTACCTGGAGAAAGGGAGTCTGGACCAAGCATTATTTGGAAAAAGAAACTTCACTCTTGATTGGCCGAAACGATTTGATATATGCTTGGGTGTGGCGAGAGGTCTGACTTATCTTCATGAGGAATCAAGGCTTCGAATTGTTCATAGAGATGTTAAAGCCAGTAACATTCTACTTGATGCTGATCTGAACCCCAAAATTTCAGATTTTGGTTTAGCAAAACTTTATGATGACAAAAAGACTCATATTAGCACCCTTGTTGCTGGGACAATTGGATATCTTGCACCCGAGTATGCCATGCGTGGCCATCTGACTGAGAAGGCTGATGTTTTTAGTTTTGGCGTTGTGGCACTTGAAATTGTCAGTGGTAGGCCAAATTCAGACCGAAGCTTGGAGGACAATGTTTTTCTTCTTGAATTGGCTTGGTACCTCTATGAAAACAATCGTGAAATCGAGTTGCTGGATTCGGATTTATCGACATTCAATGAGGACGAAGTAAAGCGAGTGATCAGAGTAGGTCTTATGTGCACTCAAACATCCCCAGCTCGGCGGCCATCAATGTCACGGGTGGTGGCAATGTTGTGTGGAGATACTGAAGTGGCTGCTATTACTTCAAAGCCAGGATACTTAACTGAATGGACCTTCGATGACGTAGTCACTTCTGCAAATGATACAACTATAGAAGGATCCAGCACTACCCATGAAGGCTCTTCAAGTTTTAGCATCCATGCTAACTATTCAACCTCTGCAAATTAA 996 41.87 MIDGLYYFDEVSTSHKKIQGLSSGILNDGRVIAVKQLSVKSDQGRNQFVAEISIISAVQHRNLVKLHGCCIEGHNRLLVYEYLEKGSLDQALFGKRNFTLDWPKRFDICLGVARGLTYLHEESRLRIVHRDVKASNILLDADLNPKISDFGLAKLYDDKKTHISTLVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIVSGRPNSDRSLEDNVFLLELAWYLYENNREIELLDSDLSTFNEDEVKRVIRVGLMCTQTSPARRPSMSRVVAMLCGDTEVAAITSKPGYLTEWTFDDVVTSANDTTIEGSSTTHEGSSSFSIHANYSTSAN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 693510 701153 - CcPI632755_11g000660.1 Cco11g0066 191302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0066 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0066 331 Gene3D Transferase(Phosphotransferase) domain 1 83 286 - -
Cco11g0066 331 Pfam Protein tyrosine and serine/threonine kinase 29 273 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0066 331 ProSiteProfiles Protein kinase domain profile. 1 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0066 331 SMART serkin_6 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0066 331 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 24 310 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco11g0066 331 CDD STKc_IRAK 24 276 - -
Cco11g0066 331 Gene3D Phosphorylase Kinase; domain 1 9 82 - -
Cco11g0066 331 FunFam Putative LRR receptor-like serine/threonine-protein kinase 83 286 - -
Cco11g0066 331 SUPERFAMILY Protein kinase-like (PK-like) 24 274 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0066 Cco-Chr11:693510 Cco11g1784 Cco-Chr11:30564885 1.00E-85 dispersed
Cco11g0066 Cco-Chr11:693510 Cco11g1783 Cco-Chr11:30552622 1.50E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87204 PF07714 PK_Tyr_Ser-Thr 4.20E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0066 - - - 0.0