Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0074 ATGTTTATAGGTGTCATCGAGCTACAAAACCCTACTCCACTTCCCAACTTCATCGCCTCCCACTGCCTCTCGTGCTTCTGCCACTACGCTACCCTCCCAGATCTGAAACCAGACCGTGGAGCATTTCTCCCTTCAGCCATGGCACTGGTCTTACACGCAGGAAAGACAAATAAAAATTCTTTCAAGGTCCTCATTGCTGCAGAATACAATGGAGTCGAAGTGAAATTGGTCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCTGTATTAGAAACGCCCGATGGCCCCATATTCGAGAGTAACGCTATAGCCCGTTATGTTTCTCGCTTGAAGGCTAATAGTCCTCTCTATTGTTCATCTCTGATAGATTATGGACATATTGAACAATGGATTGATTTTGCAACTTTGGAGATAGATTCTAATATTTTGACTTGGTTTAGACCTAGAATGGGGAGAGCTGTTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACACACCTGGCTTCAAATACATACCTAGTTGGTCATTCTGTTACATTAGCTGACATAATCTTGACTTGCAACCTGTTCTTGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCGGAGTTCCCACATGTTGAGCGGTACTTCTGGACCTTGGTCAATCAGCCAAACTTCAAAAAAATCTTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCTTCCTGTTCAATCTGTAAAGAAGCCTGATGAATCTTCTAAGCAAAAGCACACGGATGAGAGTAAGAAAGAACCTAAAAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGCTGGTGAGGGAGAGGATGAGGCACCAAAGCCAAAAACAAAAAATCCTCTTGATTTGCTACCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTATACTCGAATACCAAAACCAACTTTCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGAATACAAGTACAACGATGAGAATACTGTTTCATTTGTGACTTTGAACAAGGTTGGTGGCTTCCTTCAGCGAATGGATCTCGCTCGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAGGGTTTATGGCTTTTCCGTGGACAAGAGATACCCAAATTCGTCTTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTTGATATATCAGATGAGGCACAAAAGGAACGCGTAAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGGGAGGCTTTGTTGGATGCCAAATGTTTCAAGTGA 1407 43.57 MFIGVIELQNPTPLPNFIASHCLSCFCHYATLPDLKPDRGAFLPSAMALVLHAGKTNKNSFKVLIAAEYNGVEVKLVPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVSRLKANSPLYCSSLIDYGHIEQWIDFATLEIDSNILTWFRPRMGRAVYLPPVEEAAIAALKRALGALNTHLASNTYLVGHSVTLADIILTCNLFLGFTKLMTKSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVLPVQSVKKPDESSKQKHTDESKKEPKKEAEKEKPKAVAGEGEDEAPKPKTKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 772268 777837 - CcPI632755_11g000740.1 Cco11g0074 191310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0074 468 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 308 468 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0074 468 MobiDBLite consensus disorder prediction 260 313 - -
Cco11g0074 468 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 47 468 IPR044628 GO:0004364(InterPro)
Cco11g0074 468 CDD GST_C_EF1Bgamma_like 136 256 - -
Cco11g0074 468 Pfam Glutathione S-transferase, N-terminal domain 56 122 IPR004045 -
Cco11g0074 468 SFLD Glutathione Transferase (cytosolic) 50 236 IPR040079 -
Cco11g0074 468 FunFam Elongation factor 1-gamma 1 308 468 - -
Cco11g0074 468 SUPERFAMILY eEF1-gamma domain 309 468 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0074 468 SUPERFAMILY GST C-terminal domain-like 128 260 IPR036282 -
Cco11g0074 468 Gene3D Glutaredoxin 46 120 - -
Cco11g0074 468 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 308 468 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0074 468 SMART EF1G_2 307 415 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0074 468 FunFam Elongation factor 1 gamma 126 262 - -
Cco11g0074 468 Gene3D - 126 263 - -
Cco11g0074 468 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 47 128 IPR004045 -
Cco11g0074 468 SFLD Main (cytGST) 50 236 - -
Cco11g0074 468 CDD GST_N_EF1Bgamma 49 123 - -
Cco11g0074 468 FunFam Elongation factor 1B gamma 47 120 - -
Cco11g0074 468 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 133 261 IPR010987 -
Cco11g0074 468 Pfam Elongation factor 1 gamma, conserved domain 307 415 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0074 468 SUPERFAMILY Thioredoxin-like 46 130 IPR036249 -
Cco11g0074 468 MobiDBLite consensus disorder prediction 267 308 - -
Cco11g0074 468 Pfam Glutathione S-transferase, C-terminal domain 172 243 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0682 Cco-Chr10:9379651 Cco11g0074 Cco-Chr11:772268 1.30E-180 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0074 K03233 - rcu:8263260 718.383