Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0074 | ATGTTTATAGGTGTCATCGAGCTACAAAACCCTACTCCACTTCCCAACTTCATCGCCTCCCACTGCCTCTCGTGCTTCTGCCACTACGCTACCCTCCCAGATCTGAAACCAGACCGTGGAGCATTTCTCCCTTCAGCCATGGCACTGGTCTTACACGCAGGAAAGACAAATAAAAATTCTTTCAAGGTCCTCATTGCTGCAGAATACAATGGAGTCGAAGTGAAATTGGTCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCTGTATTAGAAACGCCCGATGGCCCCATATTCGAGAGTAACGCTATAGCCCGTTATGTTTCTCGCTTGAAGGCTAATAGTCCTCTCTATTGTTCATCTCTGATAGATTATGGACATATTGAACAATGGATTGATTTTGCAACTTTGGAGATAGATTCTAATATTTTGACTTGGTTTAGACCTAGAATGGGGAGAGCTGTTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACACACCTGGCTTCAAATACATACCTAGTTGGTCATTCTGTTACATTAGCTGACATAATCTTGACTTGCAACCTGTTCTTGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCGGAGTTCCCACATGTTGAGCGGTACTTCTGGACCTTGGTCAATCAGCCAAACTTCAAAAAAATCTTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCTTCCTGTTCAATCTGTAAAGAAGCCTGATGAATCTTCTAAGCAAAAGCACACGGATGAGAGTAAGAAAGAACCTAAAAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGCTGGTGAGGGAGAGGATGAGGCACCAAAGCCAAAAACAAAAAATCCTCTTGATTTGCTACCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTATACTCGAATACCAAAACCAACTTTCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGAATACAAGTACAACGATGAGAATACTGTTTCATTTGTGACTTTGAACAAGGTTGGTGGCTTCCTTCAGCGAATGGATCTCGCTCGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAGGGTTTATGGCTTTTCCGTGGACAAGAGATACCCAAATTCGTCTTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTTGATATATCAGATGAGGCACAAAAGGAACGCGTAAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGGGAGGCTTTGTTGGATGCCAAATGTTTCAAGTGA | 1407 | 43.57 | MFIGVIELQNPTPLPNFIASHCLSCFCHYATLPDLKPDRGAFLPSAMALVLHAGKTNKNSFKVLIAAEYNGVEVKLVPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVSRLKANSPLYCSSLIDYGHIEQWIDFATLEIDSNILTWFRPRMGRAVYLPPVEEAAIAALKRALGALNTHLASNTYLVGHSVTLADIILTCNLFLGFTKLMTKSFTSEFPHVERYFWTLVNQPNFKKILGEVKQAESVLPVQSVKKPDESSKQKHTDESKKEPKKEAEKEKPKAVAGEGEDEAPKPKTKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 772268 | 777837 | - | CcPI632755_11g000740.1 | Cco11g0074 | 191310 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0074 | 468 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 308 | 468 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0074 | 468 | MobiDBLite | consensus disorder prediction | 260 | 313 | - | - | |
Cco11g0074 | 468 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 47 | 468 | IPR044628 | GO:0004364(InterPro) | |
Cco11g0074 | 468 | CDD | GST_C_EF1Bgamma_like | 136 | 256 | - | - | |
Cco11g0074 | 468 | Pfam | Glutathione S-transferase, N-terminal domain | 56 | 122 | IPR004045 | - | |
Cco11g0074 | 468 | SFLD | Glutathione Transferase (cytosolic) | 50 | 236 | IPR040079 | - | |
Cco11g0074 | 468 | FunFam | Elongation factor 1-gamma 1 | 308 | 468 | - | - | |
Cco11g0074 | 468 | SUPERFAMILY | eEF1-gamma domain | 309 | 468 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0074 | 468 | SUPERFAMILY | GST C-terminal domain-like | 128 | 260 | IPR036282 | - | |
Cco11g0074 | 468 | Gene3D | Glutaredoxin | 46 | 120 | - | - | |
Cco11g0074 | 468 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 308 | 468 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0074 | 468 | SMART | EF1G_2 | 307 | 415 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0074 | 468 | FunFam | Elongation factor 1 gamma | 126 | 262 | - | - | |
Cco11g0074 | 468 | Gene3D | - | 126 | 263 | - | - | |
Cco11g0074 | 468 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 47 | 128 | IPR004045 | - | |
Cco11g0074 | 468 | SFLD | Main (cytGST) | 50 | 236 | - | - | |
Cco11g0074 | 468 | CDD | GST_N_EF1Bgamma | 49 | 123 | - | - | |
Cco11g0074 | 468 | FunFam | Elongation factor 1B gamma | 47 | 120 | - | - | |
Cco11g0074 | 468 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 133 | 261 | IPR010987 | - | |
Cco11g0074 | 468 | Pfam | Elongation factor 1 gamma, conserved domain | 307 | 415 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0074 | 468 | SUPERFAMILY | Thioredoxin-like | 46 | 130 | IPR036249 | - | |
Cco11g0074 | 468 | MobiDBLite | consensus disorder prediction | 267 | 308 | - | - | |
Cco11g0074 | 468 | Pfam | Glutathione S-transferase, C-terminal domain | 172 | 243 | IPR004046 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g0682 | Cco-Chr10:9379651 | Cco11g0074 | Cco-Chr11:772268 | 1.30E-180 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0074 | K03233 | - | rcu:8263260 | 718.383 |