Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0075 | ATGGGTTGCATTTGCTCGAAGGGAATTCCAGCTAACGACTATGTTGCTGAGAATCATTCCAAAGAGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGGCTTCATTGAGGAAAGAAGAATCCGTGTTACATTCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATATTGAACCAACATGGGGAAGAGAATGCTGGATCAACATCTGAATCAGATGATGCTGAGAAGGCAACACCCATTGGAAAAGCTGCCAGTGCCAAGCCACTGCGTCAAGAACAACGGCCAAGTATGGAGGATGGAGAAAAGAGAGTAGGAGTACATAACAATAATAATAATGCAACACCTAGAATAATCGGTGTTGTAATTGGTGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTGCTAACATGGATCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTACGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATCACTTCAAGGGTATCGGGCAGTTTGTACCTCATATTTGAGTATATGGAACATGATCTTGCAGGGTTGGTAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCGCAGGGAGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTCATTGACAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCGACCTTTTTCCGTTCCCGGCAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTGCAGAACTGTATGCTGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACACAAGATCTTCAAACTCTGTGGCTCCCCGTCTGAAGAATACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTTCCTTTCTCTGCATTGGCCCTTTTGGATGTCCTTCTCGCGGTGGAACCTGATGGCCGTGGAACAGCGTCCTCTGCCCTTCAAAGTGAGTTCTTTACCACTGAACCGCTTCCCTCGGATCCCTCTGCTTTGCCAAAGTACCCACCTTGCAAGGAGTTTGATGTAAAGCTTCGAGATGAGGAATCTCGAAGAAGAAGAGCTCCTGTCTGTGTTGCACATGAACATGAAGCTGCTCGTAAATTTTCCCGAGAATCAAAAGCAATTCCTGCACCAGATGCGAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCATGAAGAGGACGGTGGCTCTGGCTTTTGCATCGGCCCCCCAAGAGAAGCAACGCAAATGCAGCCAACTGCATTGGGTTCTTCACGAAACATGAATGGGAGTCAGGGTGATAATCTAAGAGGTTCTTCAGTTGGGGCAAAAGGTGCAGAACTTAGAAAACAGAGATCTTTTATGCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGGCTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGCGACTCTTCAGAAAAGCATGAATGGTCTCACCGTTTACTAGACAGGCCAAAATCTTCATATAAGATAGATGATCAATCATCTGGAAAAGAATCTACTATGAGTTATGCTCCGAAGAAGAGAATTCACTGCTCAGGACCATTGATGCCTCCCGGGGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGTACGACGACAAAGGTCAGATGGAATCGTTGCTTCACCATGCGAAGAATGGCAATTGA | 2208 | 45.06 | MGCICSKGIPANDYVAENHSKERHLKSNRSSRHGASLRKEESVLHSDGGQSDAMARLILNQHGEENAGSTSESDDAEKATPIGKAASAKPLRQEQRPSMEDGEKRVGVHNNNNNATPRIIGVVIGEKGALVIAGWPSWLTSVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATPGIKFTEAQIKCYMKQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPFSALALLDVLLAVEPDGRGTASSALQSEFFTTEPLPSDPSALPKYPPCKEFDVKLRDEESRRRRAPVCVAHEHEAARKFSRESKAIPAPDANAELQASIQKKQGQQNPTSVSEKYNHEEDGGSGFCIGPPREATQMQPTALGSSRNMNGSQGDNLRGSSVGAKGAELRKQRSFMQHGAGQLSRYSNSVAVRGGSRFGCGGESSANSHWPEECFNVSYNHFNGGDSSEKHEWSHRLLDRPKSSYKIDDQSSGKESTMSYAPKKRIHCSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYDDKGQMESLLHHAKNGN | 735 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 781104 | 791978 | + | CcPI632755_11g000750.1 | Cco11g0075 | 191311 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0075 | 735 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 278 | 290 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0075 | 735 | Gene3D | Phosphorylase Kinase; domain 1 | 145 | 240 | - | - | |
Cco11g0075 | 735 | ProSitePatterns | Protein kinases ATP-binding region signature. | 164 | 187 | IPR017441 | GO:0005524(InterPro) | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 510 | 524 | - | - | |
Cco11g0075 | 735 | Pfam | Protein kinase domain | 158 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 548 | 567 | - | - | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 18 | 112 | - | - | |
Cco11g0075 | 735 | ProSiteProfiles | Protein kinase domain profile. | 158 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 705 | 735 | - | - | |
Cco11g0075 | 735 | FunFam | probable serine/threonine-protein kinase At1g54610 | 145 | 240 | - | - | |
Cco11g0075 | 735 | Coils | Coil | 686 | 706 | - | - | |
Cco11g0075 | 735 | SMART | serkin_6 | 158 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 510 | 567 | - | - | |
Cco11g0075 | 735 | MobiDBLite | consensus disorder prediction | 705 | 727 | - | - | |
Cco11g0075 | 735 | Gene3D | Transferase(Phosphotransferase) domain 1 | 241 | 481 | - | - | |
Cco11g0075 | 735 | SUPERFAMILY | Protein kinase-like (PK-like) | 152 | 449 | IPR011009 | - | |
Cco11g0075 | 735 | PANTHER | CELL DIVISION PROTEIN KINASE | 157 | 442 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco11g0075 | 735 | FunFam | probable serine/threonine-protein kinase At1g54610 | 241 | 481 | - | - | |
Cco11g0075 | 735 | CDD | STKc_CDK9_like | 158 | 442 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0359 | Cco-Chr4:10545930 | Cco11g0075 | Cco-Chr11:781104 | 2.70E-32 | dispersed | |
Cco05g1100 | Cco-Chr5:9812202 | Cco11g0075 | Cco-Chr11:781104 | 2.10E-194 | dispersed | |
Cco08g0124 | Cco-Chr8:1967174 | Cco11g0075 | Cco-Chr11:781104 | 3.70E-193 | dispersed | |
Cco08g0380 | Cco-Chr8:8138575 | Cco11g0075 | Cco-Chr11:781104 | 1.40E-117 | dispersed | |
Cco10g1398 | Cco-Chr10:27029324 | Cco11g0075 | Cco-Chr11:781104 | 7.80E-96 | dispersed | |
Cco11g0075 | Cco-Chr11:781104 | Cco11g0469 | Cco-Chr11:4996384 | 5.00E-146 | dispersed | |
Cco11g0075 | Cco-Chr11:781104 | Cco02g1754 | Cco-Chr2:30303719 | 1.90E-161 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87206 | PF00069 | Pkinase | 3.30E-68 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0075 | - | - | - | 0.0 |