Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0075 ATGGGTTGCATTTGCTCGAAGGGAATTCCAGCTAACGACTATGTTGCTGAGAATCATTCCAAAGAGAGGCATTTGAAGTCTAATAGATCTTCCAGACATGGGGCTTCATTGAGGAAAGAAGAATCCGTGTTACATTCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATATTGAACCAACATGGGGAAGAGAATGCTGGATCAACATCTGAATCAGATGATGCTGAGAAGGCAACACCCATTGGAAAAGCTGCCAGTGCCAAGCCACTGCGTCAAGAACAACGGCCAAGTATGGAGGATGGAGAAAAGAGAGTAGGAGTACATAACAATAATAATAATGCAACACCTAGAATAATCGGTGTTGTAATTGGTGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGACATCTGTGGCTGGAGAAGCAATCAATGGATGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACGTACAGCAGTGTGTACAGGGCCCGTGATATTGAAACAAACAAGATTGTTGCATTGAAGAAGGTGCGATTTGCTAACATGGATCCTGAAAGTGTTCGTTTTATGGCCAGGGAAATTCTTATCCTACGTAGGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATCACTTCAAGGGTATCGGGCAGTTTGTACCTCATATTTGAGTATATGGAACATGATCTTGCAGGGTTGGTAGCAACCCCAGGGATCAAGTTCACTGAAGCACAGATAAAATGCTATATGAAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCGCAGGGAGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTCATTGACAATAATGGTAATCTAAAGATAGGTGATTTTGGGCTATCGACCTTTTTCCGTTCCCGGCAAAAGCAGCCTCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCACCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGCATTCTTGCAGAACTGTATGCTGGAAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACACAAGATCTTCAAACTCTGTGGCTCCCCGTCTGAAGAATACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGGTGTGTTGCTGAGACATTCAAAGACTTTCCTTTCTCTGCATTGGCCCTTTTGGATGTCCTTCTCGCGGTGGAACCTGATGGCCGTGGAACAGCGTCCTCTGCCCTTCAAAGTGAGTTCTTTACCACTGAACCGCTTCCCTCGGATCCCTCTGCTTTGCCAAAGTACCCACCTTGCAAGGAGTTTGATGTAAAGCTTCGAGATGAGGAATCTCGAAGAAGAAGAGCTCCTGTCTGTGTTGCACATGAACATGAAGCTGCTCGTAAATTTTCCCGAGAATCAAAAGCAATTCCTGCACCAGATGCGAATGCTGAATTGCAGGCATCCATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATCATGAAGAGGACGGTGGCTCTGGCTTTTGCATCGGCCCCCCAAGAGAAGCAACGCAAATGCAGCCAACTGCATTGGGTTCTTCACGAAACATGAATGGGAGTCAGGGTGATAATCTAAGAGGTTCTTCAGTTGGGGCAAAAGGTGCAGAACTTAGAAAACAGAGATCTTTTATGCAGCATGGTGCTGGACAGTTATCTCGGTATTCCAATTCTGTTGCAGTTCGAGGTGGTTCACGATTTGGCTGTGGTGGAGAAAGTAGTGCTAATTCACACTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATTTCAATGGTGGCGACTCTTCAGAAAAGCATGAATGGTCTCACCGTTTACTAGACAGGCCAAAATCTTCATATAAGATAGATGATCAATCATCTGGAAAAGAATCTACTATGAGTTATGCTCCGAAGAAGAGAATTCACTGCTCAGGACCATTGATGCCTCCCGGGGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTGCGCAAGGCTCGTATTGACAAAGCTAAGACAAAAAAGACGTACGACGACAAAGGTCAGATGGAATCGTTGCTTCACCATGCGAAGAATGGCAATTGA 2208 45.06 MGCICSKGIPANDYVAENHSKERHLKSNRSSRHGASLRKEESVLHSDGGQSDAMARLILNQHGEENAGSTSESDDAEKATPIGKAASAKPLRQEQRPSMEDGEKRVGVHNNNNNATPRIIGVVIGEKGALVIAGWPSWLTSVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKIVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLVATPGIKFTEAQIKCYMKQLLCGLEHCHAQGVLHRDIKGSNLLIDNNGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPFSALALLDVLLAVEPDGRGTASSALQSEFFTTEPLPSDPSALPKYPPCKEFDVKLRDEESRRRRAPVCVAHEHEAARKFSRESKAIPAPDANAELQASIQKKQGQQNPTSVSEKYNHEEDGGSGFCIGPPREATQMQPTALGSSRNMNGSQGDNLRGSSVGAKGAELRKQRSFMQHGAGQLSRYSNSVAVRGGSRFGCGGESSANSHWPEECFNVSYNHFNGGDSSEKHEWSHRLLDRPKSSYKIDDQSSGKESTMSYAPKKRIHCSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKKTYDDKGQMESLLHHAKNGN 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 781104 791978 + CcPI632755_11g000750.1 Cco11g0075 191311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0075 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0075 735 Gene3D Phosphorylase Kinase; domain 1 145 240 - -
Cco11g0075 735 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524(InterPro)
Cco11g0075 735 MobiDBLite consensus disorder prediction 510 524 - -
Cco11g0075 735 Pfam Protein kinase domain 158 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0075 735 MobiDBLite consensus disorder prediction 548 567 - -
Cco11g0075 735 MobiDBLite consensus disorder prediction 18 112 - -
Cco11g0075 735 ProSiteProfiles Protein kinase domain profile. 158 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0075 735 MobiDBLite consensus disorder prediction 705 735 - -
Cco11g0075 735 FunFam probable serine/threonine-protein kinase At1g54610 145 240 - -
Cco11g0075 735 Coils Coil 686 706 - -
Cco11g0075 735 SMART serkin_6 158 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0075 735 MobiDBLite consensus disorder prediction 510 567 - -
Cco11g0075 735 MobiDBLite consensus disorder prediction 705 727 - -
Cco11g0075 735 Gene3D Transferase(Phosphotransferase) domain 1 241 481 - -
Cco11g0075 735 SUPERFAMILY Protein kinase-like (PK-like) 152 449 IPR011009 -
Cco11g0075 735 PANTHER CELL DIVISION PROTEIN KINASE 157 442 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco11g0075 735 FunFam probable serine/threonine-protein kinase At1g54610 241 481 - -
Cco11g0075 735 CDD STKc_CDK9_like 158 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0359 Cco-Chr4:10545930 Cco11g0075 Cco-Chr11:781104 2.70E-32 dispersed
Cco05g1100 Cco-Chr5:9812202 Cco11g0075 Cco-Chr11:781104 2.10E-194 dispersed
Cco08g0124 Cco-Chr8:1967174 Cco11g0075 Cco-Chr11:781104 3.70E-193 dispersed
Cco08g0380 Cco-Chr8:8138575 Cco11g0075 Cco-Chr11:781104 1.40E-117 dispersed
Cco10g1398 Cco-Chr10:27029324 Cco11g0075 Cco-Chr11:781104 7.80E-96 dispersed
Cco11g0075 Cco-Chr11:781104 Cco11g0469 Cco-Chr11:4996384 5.00E-146 dispersed
Cco11g0075 Cco-Chr11:781104 Cco02g1754 Cco-Chr2:30303719 1.90E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87206 PF00069 Pkinase 3.30E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0075 - - - 0.0