Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0079 ATGGCAATGCCACAAGTAGTTGTTGTCGTGTTGATGTTTTTGTTTTTGGGTTTAGCATCCAACGCTCAACTTTCCTCCACATTTTACGACCAAACTTGTCCAATTGCACTCACCACGATTAGAATGGTTATTAGGCAAGCAATTTCTCGAGAACGTCGAATGGTTGCATCTCTCATTCGCCTCCATTTTCACGATTGCTTCGTTCAAGGTTGTGATGCGTCAATATTGCTTGACGATACTCCTTCTATGATTGGTGAACAAAATGCAGCACCCGATAGAAACTCTGCTAGAGGTTACGGGGTGATTCATAAGGCTAAGACTGAAATTGAGAAGAAATGTCTCGGTGTTGTATCTTGTGCCGATATTCTTTCTGTGGCTGCAAAGGATGCTTCTTTTGCTATGAATAAAGGTCTTAGTACTAGAGACATGTTTGCACTATCCGGTTCTCATACTATAGGACAAGCCCAATGCTTCCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGACACAGGGTTTGCCAAGACTCGTCGCAGAAATTGTCCAACATCAGGGGGAAATGGCAATTTGGCACCCCTTGATTTGGTCACACCGAATTCCTTTGATAACAACTACTTCAAAAATCTTATTCAAAGAAATGGCTTGCTAGAAACTGATCAAGTTCTTTTTAATGGAGGATCGACGGATAACATTGTTAGAGAGTATAGTAGAGATCCAACTATATTCAAATCTGACTTTACAACTGCAATGGTGAAGATGGGAGACATCCAACCTCTAACCGGCTTGGAAGGACAAATAAGAAATATATGTGGTGCTGTAAACTAA 828 40.58 MAMPQVVVVVLMFLFLGLASNAQLSSTFYDQTCPIALTTIRMVIRQAISRERRMVASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPDRNSARGYGVIHKAKTEIEKKCLGVVSCADILSVAAKDASFAMNKGLSTRDMFALSGSHTIGQAQCFLFRNRIYNQSNIDTGFAKTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLIQRNGLLETDQVLFNGGSTDNIVREYSRDPTIFKSDFTTAMVKMGDIQPLTGLEGQIRNICGAVN 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 831253 832391 - CcPI632755_11g000790.1 Cco11g0079 191315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0079 275 FunFam Peroxidase 124 254 - -
Cco11g0079 275 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Cco11g0079 275 PANTHER PEROXIDASE 72-RELATED 9 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 Pfam Peroxidase 133 239 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 ProSitePatterns Peroxidases proximal heme-ligand signature. 142 152 IPR019793 -
Cco11g0079 275 Gene3D - 27 133 - -
Cco11g0079 275 Gene3D - 255 271 - -
Cco11g0079 275 ProSiteProfiles Plant heme peroxidase family profile. 23 275 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Haem peroxidase superfamily signature 142 157 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 CDD secretory_peroxidase 23 274 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco11g0079 275 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 SUPERFAMILY Heme-dependent peroxidases 23 275 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0079 275 Gene3D Peroxidase, domain 2 134 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0079 Cco-Chr11:831253 Cco11g0108 Cco-Chr11:1159819 1.50E-127 dispersed
Cco11g0079 Cco-Chr11:831253 Cco11g0594 Cco-Chr11:6349590 3.30E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0079 K00430 - csv:116403992 451.055