Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0091 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTGCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTCTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGCGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCATCATCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAATACCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAATGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCCCGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCGGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGGAACTCCTCAAGCTCAGGCGGGAAGGCGACAGATAGAACACTTTTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTCGGCAGCGGGATGAGCTCGTTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATAGTTTTGGAGGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAGAATATCAGTGGATGGTGGAAGAATTCAAAGCTTTATACATTCTTTACATTAA 1968 45.83 MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPPSNSSTAPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQNTFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGNSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGIVLEVKKRRRKTSTDRNRFFKCNKYQCLPTSISDPRISVDGGRIQSFIHSLH 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1018161 1022433 - CcPI632755_11g000910.1 Cco11g0091 191327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0091 655 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cco11g0091 655 SMART c2h2final6 119 149 IPR013087 -
Cco11g0091 655 SMART c2h2final6 154 174 IPR013087 -
Cco11g0091 655 SMART c2h2final6 78 100 IPR013087 -
Cco11g0091 655 MobiDBLite consensus disorder prediction 1 63 - -
Cco11g0091 655 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 215 - -
Cco11g0091 655 Pfam Zinc-finger of C2H2 type 78 100 IPR013087 -
Cco11g0091 655 Gene3D Classic Zinc Finger 132 211 - -
Cco11g0091 655 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 594 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco11g0091 655 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cco11g0091 655 MobiDBLite consensus disorder prediction 362 405 - -
Cco11g0091 655 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cco11g0091 655 FunFam protein indeterminate-domain 12-like 57 125 - -
Cco11g0091 655 MobiDBLite consensus disorder prediction 26 41 - -
Cco11g0091 655 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cco11g0091 655 Gene3D Classic Zinc Finger 57 126 - -
Cco11g0091 655 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cco11g0091 655 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0708 Cco-Chr9:6393795 Cco11g0091 Cco-Chr11:1018161 2.20E-84 dispersed
Cco11g0091 Cco-Chr11:1018161 Cco10g2030 Cco-Chr10:33714856 2.60E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60211 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0091 K25870 - csv:101219959 981.474