Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0107 | ATGTGCCATTCCAACGACTCCACAGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTCGGTGGGAGAAAGCTAGTTGGTCGACTACCGATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGATCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTAGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAGTCTAACAAGCCTTGTTCGGTTAGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATCCCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACAAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGACTTGGGGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTCGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAATAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCATAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCGCCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATTGAAACGCTTTCACATGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCGGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATTGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGTAAGTTAA | 2934 | 40.8 | MCHSNDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGSLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLIVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKAALPDGRKVAIKRLSGDCGQMDREFQAEIETLSHAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVS | 977 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1152940 | 1155873 | - | CcPI632755_11g001070.1 | Cco11g0107 | 191343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0107 | 977 | ProSiteProfiles | Protein kinase domain profile. | 702 | 973 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0107 | 977 | SUPERFAMILY | L domain-like | 43 | 133 | - | - | |
Cco11g0107 | 977 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 664 | 777 | - | - | |
Cco11g0107 | 977 | FunFam | Leucine-rich repeat receptor-like protein kinase | 778 | 977 | - | - | |
Cco11g0107 | 977 | Pfam | Protein kinase domain | 703 | 970 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine Rich repeat | 259 | 275 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | SUPERFAMILY | L domain-like | 484 | 599 | - | - | |
Cco11g0107 | 977 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 281 | 610 | - | - | |
Cco11g0107 | 977 | SMART | serkin_6 | 702 | 973 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0107 | 977 | SUPERFAMILY | RNI-like | 141 | 449 | - | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 67 | 91 | IPR003591 | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 115 | 139 | IPR003591 | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 212 | 235 | IPR003591 | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 538 | 561 | IPR003591 | - | |
Cco11g0107 | 977 | SMART | LRR_typ_2 | 284 | 308 | IPR003591 | - | |
Cco11g0107 | 977 | Gene3D | Ribonuclease Inhibitor | 282 | 607 | IPR032675 | - | |
Cco11g0107 | 977 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 184 | 277 | - | - | |
Cco11g0107 | 977 | Pfam | Leucine rich repeat | 285 | 345 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine rich repeat | 69 | 127 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Gene3D | Transferase(Phosphotransferase) domain 1 | 778 | 976 | - | - | |
Cco11g0107 | 977 | PRINTS | Leucine-rich repeat signature | 538 | 551 | - | - | |
Cco11g0107 | 977 | PRINTS | Leucine-rich repeat signature | 70 | 83 | - | - | |
Cco11g0107 | 977 | ProSiteProfiles | Leucine-rich repeat profile. | 540 | 561 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | SUPERFAMILY | Protein kinase-like (PK-like) | 686 | 973 | IPR011009 | - | |
Cco11g0107 | 977 | Gene3D | Ribonuclease Inhibitor | 3 | 281 | IPR032675 | - | |
Cco11g0107 | 977 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 777 | - | - | |
Cco11g0107 | 977 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 824 | 836 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0107 | 977 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 284 | 975 | IPR051420 | - | |
Cco11g0107 | 977 | Pfam | Leucine Rich Repeat | 409 | 430 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine Rich Repeat | 540 | 562 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine Rich Repeat | 214 | 233 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine Rich Repeat | 166 | 187 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | Pfam | Leucine Rich Repeat | 434 | 452 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0107 | 977 | ProSitePatterns | Protein kinases ATP-binding region signature. | 708 | 730 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0741 | Cco-Chr1:7848637 | Cco11g0107 | Cco-Chr11:1152940 | 3.50E-35 | dispersed | |
Cco05g1094 | Cco-Chr5:9744968 | Cco11g0107 | Cco-Chr11:1152940 | 3.40E-143 | dispersed | |
Cco08g1026 | Cco-Chr8:22114419 | Cco11g0107 | Cco-Chr11:1152940 | 6.20E-63 | dispersed | |
Cco09g0341 | Cco-Chr9:3012592 | Cco11g0107 | Cco-Chr11:1152940 | 2.40E-136 | dispersed | |
Cco11g0107 | Cco-Chr11:1152940 | Cco11g0541 | Cco-Chr11:5714802 | 8.30E-72 | dispersed | |
Cco11g0107 | Cco-Chr11:1152940 | Cco05g0956 | Cco-Chr5:8373359 | 4.40E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87207 | PF00069 | Pkinase | 7.00E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0107 | K27625 | - | csv:116404121 | 1661.35 |