Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0107 ATGTGCCATTCCAACGACTCCACAGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTCGGTGGGAGAAAGCTAGTTGGTCGACTACCGATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGATCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTAGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAGTCTAACAAGCCTTGTTCGGTTAGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATCCCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACAAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGACTTGGGGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTCGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAATAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCATAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCGCCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATTGAAACGCTTTCACATGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCGGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATTGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGTAAGTTAA 2934 40.8 MCHSNDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGSLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLIVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKAALPDGRKVAIKRLSGDCGQMDREFQAEIETLSHAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKVS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1152940 1155873 - CcPI632755_11g001070.1 Cco11g0107 191343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0107 977 ProSiteProfiles Protein kinase domain profile. 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0107 977 SUPERFAMILY L domain-like 43 133 - -
Cco11g0107 977 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Cco11g0107 977 FunFam Leucine-rich repeat receptor-like protein kinase 778 977 - -
Cco11g0107 977 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0107 977 Pfam Leucine Rich repeat 259 275 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 SUPERFAMILY L domain-like 484 599 - -
Cco11g0107 977 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 610 - -
Cco11g0107 977 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0107 977 SUPERFAMILY RNI-like 141 449 - -
Cco11g0107 977 SMART LRR_typ_2 67 91 IPR003591 -
Cco11g0107 977 SMART LRR_typ_2 115 139 IPR003591 -
Cco11g0107 977 SMART LRR_typ_2 212 235 IPR003591 -
Cco11g0107 977 SMART LRR_typ_2 188 211 IPR003591 -
Cco11g0107 977 SMART LRR_typ_2 538 561 IPR003591 -
Cco11g0107 977 SMART LRR_typ_2 284 308 IPR003591 -
Cco11g0107 977 Gene3D Ribonuclease Inhibitor 282 607 IPR032675 -
Cco11g0107 977 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Cco11g0107 977 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Gene3D Transferase(Phosphotransferase) domain 1 778 976 - -
Cco11g0107 977 PRINTS Leucine-rich repeat signature 538 551 - -
Cco11g0107 977 PRINTS Leucine-rich repeat signature 70 83 - -
Cco11g0107 977 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cco11g0107 977 Gene3D Ribonuclease Inhibitor 3 281 IPR032675 -
Cco11g0107 977 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Cco11g0107 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0107 977 PANTHER LEUCINE RICH REPEAT KINASE 2 284 975 IPR051420 -
Cco11g0107 977 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Pfam Leucine Rich Repeat 166 187 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Cco11g0107 977 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0741 Cco-Chr1:7848637 Cco11g0107 Cco-Chr11:1152940 3.50E-35 dispersed
Cco05g1094 Cco-Chr5:9744968 Cco11g0107 Cco-Chr11:1152940 3.40E-143 dispersed
Cco08g1026 Cco-Chr8:22114419 Cco11g0107 Cco-Chr11:1152940 6.20E-63 dispersed
Cco09g0341 Cco-Chr9:3012592 Cco11g0107 Cco-Chr11:1152940 2.40E-136 dispersed
Cco11g0107 Cco-Chr11:1152940 Cco11g0541 Cco-Chr11:5714802 8.30E-72 dispersed
Cco11g0107 Cco-Chr11:1152940 Cco05g0956 Cco-Chr5:8373359 4.40E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87207 PF00069 Pkinase 7.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0107 K27625 - csv:116404121 1661.35