Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0108 ATGTCTCGACTAGTTGTTGTTGCATTCACGTTGTTGCTTTTGGGTTTAGCATGCAATGCCCAACTTTCTTCTTCGTTTTACGACCAAACTTGTCCCTCTGCACTCACCACTATTAGAACAGTTATTAGGCAAGCGATCTCTCAAGAACGTCGTATGGCTGCGTCTCTCATTCGCCTCCATTTCCATGATTGTTTTGTTCAGGGATGCGATGCATCGATATTGCTTGATGATACTCCCTCGATGATTGGCGAACAAAATGCAGCACCCAACATAAATTCTGCTAGGGGTTACGGAGTGATACACAAGGCCAAGACTGAAGTTGAGAAAATATGTCCTGGTGTGGTATCTTGTGCAGATATTCTTGCTATAGCTGCAAGAGATGCTTCTTTTACTGTTGGTGGTCCATCTTGGACAGTAAGACTTGGAAGAAGAGACTCTACTACGGCAAGCAAAGCTCTAGCGGAGAGTGAGCTTCCACATTTCCAAGAAAGTCTTGATAGGCTAATTTCCATTTTTGCAAATAAAGGACTTAGTACGAGAGATATGGTTGCATTGTCAGGTTCTCATACTATAGGACAAGCTCAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGTCGTAGAAATTGTCCAACATCAGGTGGAAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAGGGTTTGCTAGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAATATTGTTACAGAGTACAGTAGAGATCCAACCGCATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATTCAACCTCTCACTGGTTCAAAAGGACAGATAAGAAACATATGTGGTATTGTTAACTAA 945 40.53 MSRLVVVAFTLLLLGLACNAQLSSSFYDQTCPSALTTIRTVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKICPGVVSCADILAIAARDASFTVGGPSWTVRLGRRDSTTASKALAESELPHFQESLDRLISIFANKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFASTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIVTEYSRDPTAFKSDFAAAMIKMGDIQPLTGSKGQIRNICGIVN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1159819 1160951 + CcPI632755_11g001080.1 Cco11g0108 191344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0108 314 FunFam Peroxidase 25 174 - -
Cco11g0108 314 PANTHER PEROXIDASE 72-RELATED 11 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 Pfam Peroxidase 38 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 CDD secretory_peroxidase 21 313 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco11g0108 314 Gene3D - 26 310 - -
Cco11g0108 314 ProSiteProfiles Plant heme peroxidase family profile. 21 314 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 Gene3D Peroxidase, domain 2 159 293 - -
Cco11g0108 314 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0108 314 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cco11g0108 314 FunFam Peroxidase 159 293 - -
Cco11g0108 314 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Cco11g0108 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0025 Cco-Chr3:278377 Cco11g0108 Cco-Chr11:1159819 6.50E-88 dispersed
Cco07g1807 Cco-Chr7:32197567 Cco11g0108 Cco-Chr11:1159819 8.20E-72 dispersed
Cco11g0079 Cco-Chr11:831253 Cco11g0108 Cco-Chr11:1159819 1.50E-127 dispersed
Cco11g0108 Cco-Chr11:1159819 Cco11g0594 Cco-Chr11:6349590 1.10E-105 dispersed
Cco11g0108 Cco-Chr11:1159819 Cco11g0109 Cco-Chr11:1164916 2.90E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0108 K00430 - csv:116403994 572.007