Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0109 ATGGCAATGACTCGAGTAATCCTCGTTGCTACGTTGTCGTTGTTGCTTTTTGGTATAGCTTGTGATGCCCAACTTTCTTCTACATTTTATGATCAAACTTGTCCTACTGCACTCAATACTATTAGAACTGTTGTTAGGCAAGCAGTTTCTCAAGAGCGTCGAATGGCTGCATCTCTCATTCGCCTCCATTTTCATGATTGTTTTGTTCAAGGTTGTGATGCATCGATATTGCTTGATGACACTCCTTCCATGATTGGTGAACAAAATGCAGCTCCAAACAGAAACTCTGCAAGAGGTTATGGGGTGATACACAAGGCTAAGACTGAAGTTGAGAAGATATGTCCTGGTGTTGTATCTTGTGCAGATATTCTTACTGTGGCTGCAAGAGATGCATCTTTTGCTGTCGGAGGTCCATCTTGGACAGTGAAACTTGGAAGACGAGATTCTACCACCGCAAGTAAAACTCTAGCAGAAAGCGAGCTACCAGGCTTCCAAGAAAGCCTTGACAAACTTATATCCATTTTTGAGAACAAAGGTCTTAGTGCTAGAGACATGGTTGCACTTTCAGGTTCTCACACCATAGGACAAGCCCAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGACACAGGATTTGCTAGTACTCGTCGTAGAAATTGTCCTACAACTGGTGGTAATGGAAATTTGGCACCACTTGATTTGGTTACACCTAACTCCTTTGACAATAACTACTTCAAAAATCTTGTGCAAAAAAAGGGATTGCTTGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAATATTGTCACAGAGTATAGTAGGAATCCCACTACATTCAAATCAGATTTTGCAACTGCAATGATAAAAATGGGAAACATTCAACCTCTCATTGGAGTAGAAGGACAAATAAGAAAGATATGTGGTGCAGTGAACTAA 954 40.15 MAMTRVILVATLSLLLFGIACDAQLSSTFYDQTCPTALNTIRTVVRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKICPGVVSCADILTVAARDASFAVGGPSWTVKLGRRDSTTASKTLAESELPGFQESLDKLISIFENKGLSARDMVALSGSHTIGQAQCFLFRNRIYNQSNIDTGFASTRRRNCPTTGGNGNLAPLDLVTPNSFDNNYFKNLVQKKGLLETDQVLFNGGSTDNIVTEYSRNPTTFKSDFATAMIKMGNIQPLIGVEGQIRKICGAVN 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1164916 1166076 - CcPI632755_11g001090.1 Cco11g0109 191345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0109 317 PANTHER PEROXIDASE 72-RELATED 13 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 Gene3D - 28 313 - -
Cco11g0109 317 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 291 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 CDD secretory_peroxidase 24 316 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco11g0109 317 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 FunFam Peroxidase 162 296 - -
Cco11g0109 317 FunFam Peroxidase 28 178 - -
Cco11g0109 317 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cco11g0109 317 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Cco11g0109 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Cco11g0109 317 Gene3D Peroxidase, domain 2 162 296 - -
Cco11g0109 317 ProSiteProfiles Plant heme peroxidase family profile. 24 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0109 317 SUPERFAMILY Heme-dependent peroxidases 24 317 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0109 Cco-Chr11:1164916 Cco11g0594 Cco-Chr11:6349590 1.70E-106 dispersed
Cco11g0108 Cco-Chr11:1159819 Cco11g0109 Cco-Chr11:1164916 2.90E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0109 K00430 - csv:116403992 556.599