Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0111 ATGGGTCTCTTCTTCTTCCTCTCTACAATGCCCATTTCAAGGCTTTGCCTATTTCTCGCCTTCTTTCCGCTGTTTCTTTCACCCCTTTCCGCCGCCGCCGATGACCGGAGCTTCCTCCTCCGCCACCACCGCCACCTCCTCCACCAACCCTTTTTCCCATGGACTTCTTTACCTCCATCTCAAGCTCCATCTTCTCTTTCTCCCTTGCCTCAACCACAGCACCAACAGCCTAAACTCCCCTTTTCTTCTACTTCATTTTCCTCGCCCCCTAAACCCTTTTTTCCATCCTACCCTTCGTCGCCGCCGCCGCCTCCGTCGCCTCCTTTGACGGCGCTCCCTACATTTCCGGCCAACATTTCTGCTCTTCTCTTTCCGCAGCCTACTTCTTCTTCCCAACACCTCCACCGCCATGTCTTTGCCATTGTCATCTCTGTTTCTCTTGTCTTCTCTGTTCTTGTTTTTCTCGTTGCTCTGTACTTTTACTTTCGAAAGCGGAACCGACAAATCTCTGCTACTGATAAGGCCTCGAGAACAGATAATCTCCGGCTGTATCCGCCGGATATTGACACTTCTGATGGAGTTCACAAACACAGAACCTCCTCCACCACCAGCTCCAAATTTCTTTATCTTGGGACTTTGGCTACTTCTCGAGAGATTGATGAGGAGGCCGCCGGAAATGTGGAGGACGGTGGCCGCGGGATCGTGGAGTCTGTTTCTCCGGTGAAAATGGGGTCGCCGGAGCTGAAGCCCCTTCCACCGCTTCCTCGCCGGAATTTCGCCGAAGATTATCAGAGGAATGTTGATAGTAATGACAACGATGATGACGAAGAAGATCGCGACGATGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGTCGGCGGGAAGGATAATGTGGGGAGTAATAGAAGATTGAGCCCTGTGAAGTTGTTTCATAATGTGGAAACTGAAAATTTCTTGAGGAAAAGCTATAATTCCAGTTTGAATTCTGGTTCTCCCTCTGTTTCTGTTCCCAATAGTCCTTCTCCGCCATTGATGTTGAGCCCCACGAGTTTGAGATCGAAGTCGCCTGACTCCATTATCAGATTCCCTGTTCCTTTACGGCCATTGCCAACACTTCCGGTACCGCCATCACCGTCGTTGTCCTCTGCTTCTTCACCACTGGGAGGTTCAGGGAACACCAAGAACTCGCCGTCGAGAGATTCCGATTTGTCAGAGCTGCATCGGCAGTGTTCAAATGGTTTTAGGATGGATTACCAGCAACCATTACCGGTAAAACTACCACCACCCCGGCCACCACCACCGCCGCCACCTCCTCCAATGTTTTGGGAGATTCCTCAATCTTCCTCTCTTCTCAACAAGGAACCAAATCTAGGTCCACCAGTACTCACCGTGCCATCAAGACCGATACTCTCACAGAACATAGCTCATATGTCAGCAGGGGAGCAATCAAACACCATTGGAGATGCAGAGAGAATGGAAGAAAATTCGAAGCCGAAACTGAAGGCCTTGCATTGGGACAAAGTTCGGACGAGCTCCGATCGAGCCATGGTGTGGGATCAGATCAAGTCGAGTTCTTTTCAGTTGAATGAGGAAATGATTGAATCACTTTTTATGGTGAATAACAATAATTCAAGTCTGATGAGCAAGGAAAATGGTAGTGCTCGTCAAAACATGCCTTTAGGGAGCCAAGAGAATCGAGTTCTTGATCCTAAGAAGTCTCAGAATATTGCAATTTTGTTGAGGGCACTTAATGTTACCATTGAAGAAGTCTCAGAGGCCCTTTTGGAAGGAAATTCAGATACTTTGTGTACCGAACTGCTAGAAAGTTTACTAAAAATGGCGCCGACCGAAGAAGAAGAACGTAATTTGAAAGAATACAAAGATGATTCACCTTTTAAACTTGGCCCAGCTGAGAAATTCCTCAAGGTAGTTCTCGATGTACCATTTGCATTCAAAAGGGTGGATGCAATGCTTTACATTGCTAATTTCGAATCTGAGGTCGAGTACCTCAATCGGTCCTTTGAAACTCTTGAGGCTGCTTGTACAGAATTGAAGAACAGCAGAATGTTTCTCAAACTTCTTGAAGCAGTGCTCAAAACCGGGAATCGGATGAATGTAGGCACGAACCGAGGCGATGCACATGCTTTTAAACTCGATACCCTTCTCAAGCTTGTCGATATCAAGGGCACTGATGGAAAGACCACTCTCTTGCATTTCGTAGTGCAGGAGATTATTAGAGCTGAAGGTTATCGACACTCCACCTCTGACCTCAACCTGACAGCTGATAAAACTCAACAATCTTCCTTAACAAATGACATCGAGTTTCGGAAGCTTGGTCTTCAAGTCGTTTCAGGTCTTAGTAGGGAGCTATCCAATGTGAAAAAAGCTGCATTAATGGATGCAGATGTGCTTAGCAACGACGTAGGGAAACTCGCTGGAGGGATCACAAAAATCACTGAGGTCATTAGATTAAACGAAGACACGTCGAAAGGAGGGAGTAAGTCAAATTTCTCGGACTCCATGAACAGGTTCTTGGGGAGGGCAGCTGAAGAAGTAGCAAGGGTACAAGTCAAAGAGGGCATTGTCCTCTCCATGGTAAAGGAAATAACCGAATACTTTCATGGAAACTTATCGAAAGAAGAAGCTCGGCCGCTGCGTATATTCATGGTGGTAAAGGATTTTCTTGCAATCTTAGATCAGGTATGCAAAGAAGTCGGAAGAATCAATGAAAGAACAATAGTTGGTTCGGCTCGTCAATTTACGGGCCCTCCGAATCCATGTCTTCCATCGATTTTCCCTGGATTATGCGAAAGTCAGCGCTATGGTTCCTCTGATGATGATAGCTCATCTTCCTCATCTTAG 2862 46.82 MGLFFFLSTMPISRLCLFLAFFPLFLSPLSAAADDRSFLLRHHRHLLHQPFFPWTSLPPSQAPSSLSPLPQPQHQQPKLPFSSTSFSSPPKPFFPSYPSSPPPPPSPPLTALPTFPANISALLFPQPTSSSQHLHRHVFAIVISVSLVFSVLVFLVALYFYFRKRNRQISATDKASRTDNLRLYPPDIDTSDGVHKHRTSSTTSSKFLYLGTLATSREIDEEAAGNVEDGGRGIVESVSPVKMGSPELKPLPPLPRRNFAEDYQRNVDSNDNDDDEEDRDDEEFFSPRGSSVGGKDNVGSNRRLSPVKLFHNVETENFLRKSYNSSLNSGSPSVSVPNSPSPPLMLSPTSLRSKSPDSIIRFPVPLRPLPTLPVPPSPSLSSASSPLGGSGNTKNSPSRDSDLSELHRQCSNGFRMDYQQPLPVKLPPPRPPPPPPPPPMFWEIPQSSSLLNKEPNLGPPVLTVPSRPILSQNIAHMSAGEQSNTIGDAERMEENSKPKLKALHWDKVRTSSDRAMVWDQIKSSSFQLNEEMIESLFMVNNNNSSLMSKENGSARQNMPLGSQENRVLDPKKSQNIAILLRALNVTIEEVSEALLEGNSDTLCTELLESLLKMAPTEEEERNLKEYKDDSPFKLGPAEKFLKVVLDVPFAFKRVDAMLYIANFESEVEYLNRSFETLEAACTELKNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGYRHSTSDLNLTADKTQQSSLTNDIEFRKLGLQVVSGLSRELSNVKKAALMDADVLSNDVGKLAGGITKITEVIRLNEDTSKGGSKSNFSDSMNRFLGRAAEEVARVQVKEGIVLSMVKEITEYFHGNLSKEEARPLRIFMVVKDFLAILDQVCKEVGRINERTIVGSARQFTGPPNPCLPSIFPGLCESQRYGSSDDDSSSSSS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1182128 1186379 - CcPI632755_11g001110.1 Cco11g0111 191347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0111 953 MobiDBLite consensus disorder prediction 62 90 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 268 282 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 422 439 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 373 404 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 91 110 - -
Cco11g0111 953 Coils Coil 660 680 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 62 110 - -
Cco11g0111 953 Gene3D Formin, FH2 domain 489 908 IPR042201 -
Cco11g0111 953 MobiDBLite consensus disorder prediction 324 355 - -
Cco11g0111 953 MobiDBLite consensus disorder prediction 221 303 - -
Cco11g0111 953 SUPERFAMILY Formin homology 2 domain (FH2 domain) 427 911 - -
Cco11g0111 953 SMART it6_source 490 913 IPR015425 -
Cco11g0111 953 ProSiteProfiles Formin homology-2 (FH2) domain profile. 490 924 IPR015425 -
Cco11g0111 953 MobiDBLite consensus disorder prediction 381 399 - -
Cco11g0111 953 PANTHER FORMIN-RELATED 22 947 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Cco11g0111 953 MobiDBLite consensus disorder prediction 418 439 - -
Cco11g0111 953 Pfam Formin Homology 2 Domain 493 898 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1771 Cco-Chr3:32389381 Cco11g0111 Cco-Chr11:1182128 2.10E-106 dispersed
Cco05g1695 Cco-Chr5:24880812 Cco11g0111 Cco-Chr11:1182128 2.20E-97 dispersed
Cco07g0242 Cco-Chr7:2495221 Cco11g0111 Cco-Chr11:1182128 1.30E-166 dispersed
Cco08g1035 Cco-Chr8:22168224 Cco11g0111 Cco-Chr11:1182128 1.40E-68 dispersed
Cco10g1059 Cco-Chr10:22657520 Cco11g0111 Cco-Chr11:1182128 7.30E-10 dispersed
Cco11g0111 Cco-Chr11:1182128 Cco02g0897 Cco-Chr2:10793166 9.50E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0111 K28090 - csv:101213912 1375.92