Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0125 ATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTTTAATGAGCAAATTGGAAGTAAAAAAGGGGTCACATTCATTCAAGCCAAGAGGGCTTGGCTTCCTAAGTTCCTATTGCTTTGGGTTCTGTTGGTGGCATTCATCAGTATGCTAATCTACAAGGGAATGGATGCTGACAACAAAGTTAGAAGAAAGGAAGTTTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCACTGTCAGTGTCAACCATGTCCATGCTTTAGCCATTCTCATTTCCACTTTCCACTACTCCAAAAACATATCAGCAATTGATCAGGAAACTTTTGCTGAGTACACTGCCAGAACAGCTTTCGAGCGGCCTTTGCTTAGTGGCGTGGCATTTGCGCAAAGAGTGGTGCACTTTGAGCGAGAGAAATTTGAGAAGCAACATGGGTGGACTATAAAAACAATGGAAAGGGAACCATCACCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAGACTGTTTCCTACATCGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGCGAGAACATTTTGAGGTCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGGCTACTGGGTTCTCATCATCTTGGAGTTGTGTTGACGATCCCTGTTTATAAAACCAAGCTTCCTGCAAATCCAACCATGGATGAACGAACTCGAGCAACGGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCGCTTGTGGAAAATTTACTTGGGCAACTTGCTGGCAATCAGGCCATTTTGGTGAATGTATACGATGTCACAAACTACTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGATGGTGACATGTCTCTTTTACATGAGAGCAAACTAGATTTTGGAGATCCATTTAGGAAGCATCAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACAGCACTTACTACCGCATTCTTATTCTTTGTGATTGGATTGCTAGTGGGATATATCCTATATGGTGCAGCAACTCATATTGTTAAAGTTGAGGATGATTTCAATGAAATGCAAGAACTGAAAGGTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTCGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTTGACACTGAACTGAGTTCAACTCAAAGGGATTATGCTCAAACTGCCCAGGCCTGTGGAAAAGCACTGATAGCATTGATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGGAAGTTGGAGCTTGAAGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCAAGGCACAAGGGAGTAGAGTTGGCAGTATTCGTTTCTGACAAAGTTCCTGAAATTGTTATGGGAGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTCGTGGGTAACTCTGTGAAATTCACAGAACAAGGACATATATTTGTCAAAGTTCAATTAGCCGAACAATCAATGACCTCTACGAATATCAAATCTGAAACTCACGTGAATGGAAACTTAGAGGATGGTGCATCGCACAATAAACATCAGTTTGAAACCTTAAGTGGATTTGAGGCAGCTGATAACCAAAACAGTTGGGACACTTTTAAGCACCTAGCAAATGAGGAATTCCAACCGAACGGTTCAAGCAATCTCATGGCTACAAATGAAAGTTCTGATATTGTTACTGTCATGATATCTGTGGAAGATACTGGAATTGGGATTCCGTTATGCGCTCAAGGTCGAGTTTTTATGCCGTTTATGCAAGCAGATAGCTCAACCTCCAGAAACTATGGTGGAACTGGCATTGGCTTAAGCATCAGTAAGTGTTTGGTTGAGCTAATGGGCGGCCAGATTAACTTTGTAAGCCGGCCTCAGGTTGGAAGCACGTTCTCATTCACTGCTGTATTTGGGAGATGTGAGAAGAAAGCGACAGTTGACATCAAAAAGTCTAATTTGGAGGAACTTCCTTCTGCATTTAGAGGATTGAAAGCTGTTGTAGTCGATGGGAAACCAGTTAGAGCTGCTGTTACCAAATACCATTTGAAGAGACTTGGCATCCTGGTTGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGATCAGTTAGATCAAGTAATATACTTCAGCCTGACGTAATTCTTCTCGAGAAAGATATCTTTATTTCAAATGAGGAATGTGGTTCTTCTAATTTGCTTCATCAATTAGACTGGAAGCAGAATGGTCATGCCTTAAAATTGCCAAAATTGATCCTTCTTGCAACTAGCATGAGCACGGTGGAATTTGATAAAGCGAAGGAAGTGGGTTTCTCTGACACCTTGATCATGAAACCACTGAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGACAGCTTGGGAAGGACATGGCTAATGGCTCTAACTTTCTTAAAGGGCTGCTCTGTGGTAAGAAAATATTGGTCGTTGATGACAATAGGGTAAACCGAAGAGTTGCTGCAGGTGCTTTGAAGAAATTTGGTGCCGATGTAGAGTGTGTCGACAGTGGGAAAGCTGCACTGGCATTGCTTCAATTGCCACACACTTTTGATGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTTGAAGCGACCCGAAGAATCAGGCTGATGGAGAGCAAGGAAAATGAGGTACTGATTAGGGAATCTGATGGCAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCAATGACCGCAGATGTAATTCACGCAACATACGACGAGTGCCTAAAATGTGGGATGGACGGATACGTATCGAAGCCATTTGAGGAAGAGAATCTTTACCAGGCAGTTGCCAAGTTTTTCAAATCAAAGCCCATCACCGATTCATGA 3015 42.75 MSMKMQQSHHSVAVRFNEQIGSKKGVTFIQAKRAWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCDQRARMLQDQFTVSVNHVHALAILISTFHYSKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHFEREKFEKQHGWTIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFNEMQELKGLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMTSTNIKSETHVNGNLEDGASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNESSDIVTVMISVEDTGIGIPLCAQGRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQVGSTFSFTAVFGRCEKKATVDIKKSNLEELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHALKLPKLILLATSMSTVEFDKAKEVGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDMANGSNFLKGLLCGKKILVVDDNRVNRRVAAGALKKFGADVECVDSGKAALALLQLPHTFDACFMDIQMPEMDGFEATRRIRLMESKENEVLIRESDGKENARKDEWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFKSKPITDS 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1321306 1328721 - CcPI632755_11g001250.1 Cco11g0125 191361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0125 1004 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco11g0125 1004 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco11g0125 1004 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco11g0125 1004 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco11g0125 1004 SMART REC_2 859 992 IPR001789 GO:0000160(InterPro)
Cco11g0125 1004 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco11g0125 1004 FunFam Histidine kinase 3 854 1000 - -
Cco11g0125 1004 SMART CHASE_2 107 292 IPR006189 -
Cco11g0125 1004 ProSiteProfiles Response regulatory domain profile. 700 833 IPR001789 GO:0000160(InterPro)
Cco11g0125 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 598 670 IPR003594 -
Cco11g0125 1004 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco11g0125 1004 FunFam Histidine kinase 4 111 326 - -
Cco11g0125 1004 Gene3D - 694 837 - -
Cco11g0125 1004 Gene3D - 855 1003 - -
Cco11g0125 1004 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco11g0125 1004 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Cco11g0125 1004 FunFam Histidine kinase 4 352 443 - -
Cco11g0125 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 996 IPR050956 -
Cco11g0125 1004 CDD REC_hyHK_CKI1_RcsC-like 861 992 - -
Cco11g0125 1004 Pfam CHASE domain 110 290 IPR006189 -
Cco11g0125 1004 ProSiteProfiles Response regulatory domain profile. 860 996 IPR001789 GO:0000160(InterPro)
Cco11g0125 1004 Gene3D - 444 678 IPR036890 -
Cco11g0125 1004 SMART HKATPase_4 492 675 IPR003594 -
Cco11g0125 1004 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco11g0125 1004 SUPERFAMILY CheY-like 858 996 IPR011006 -
Cco11g0125 1004 Gene3D CHASE domain 111 326 IPR042240 -
Cco11g0125 1004 Gene3D - 353 443 - -
Cco11g0125 1004 SUPERFAMILY CheY-like 696 834 IPR011006 -
Cco11g0125 1004 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Cco11g0125 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Cco11g0125 1004 Coils Coil 430 450 - -
Cco11g0125 1004 Pfam Response regulator receiver domain 861 992 IPR001789 GO:0000160(InterPro)
Cco11g0125 1004 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Cco11g0125 1004 Gene3D - 58 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0703 Cco-Chr1:7357528 Cco11g0125 Cco-Chr11:1321306 0.00E+00 dispersed
Cco05g1829 Cco-Chr5:27141792 Cco11g0125 Cco-Chr11:1321306 1.40E-50 dispersed
Cco06g0219 Cco-Chr6:2329359 Cco11g0125 Cco-Chr11:1321306 4.70E-278 dispersed
Cco10g0065 Cco-Chr10:647061 Cco11g0125 Cco-Chr11:1321306 6.90E-42 dispersed
Cco11g0125 Cco-Chr11:1321306 Cco11g1025 Cco-Chr11:19012665 6.30E-06 dispersed
Cco11g0125 Cco-Chr11:1321306 Cco02g0290 Cco-Chr2:2629916 1.50E-278 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60213 PF02518 HATPase_c 2.10E-31 CL0025 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0125 K14489 - csv:101204531 1894.4