Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0144 ATGGGGGACGAGGAGAATAATGGGAAGGGGAGTAGCCGGTTGGCGCCGCCGCGGGGTCCAGCGGAGCACTGTGTGGAAATTGTTCATCCGGTGGTTCCGCCGCCGAGGAGAAGCTGGATACAGAAGCTGCGCAACCGGCTGAAGGAAATATTTTTTCCCGACGATCCTCTCCGGCAGTTCAAAGGGCAGCCTCCGGCGAGGAAATGGGTGATTGGAGGTCAATATATATTCCCAATTCTTCAATGGGGGCCTCACTATAATCTTAGCCTTTTTAAATCTGATGTTGTTGCTGGTCTCACCATTGCTAGCTTGGCCATACCTCAGGGTATTAGCTATGCTAAGCTTGCTAATTTGCCTCCCATTGTCGGACTTTATTCAAGCTTTGTTCCACCACTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATTGCATCACTAATATTGGGTTCCATGCTGAGGCAACAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAACTTGGCTTCACTTCTACCTTCTTCGCGGGTCTTTTCCAAGCTTTGCTCGGGTTTCTCAGACTTGGTTTTATAATAGATTTTTTATCGAAGGCGACTTTGATTGGATTCATGGCAGGAGCAGCTATTATTGTGTCTTTGCAACAACTTAAAGGGTTGCTTGGAATAACCCATTTCACCAAACAGATGGGTTTGATTCCTGTTTTGTCCTCAGTTTTTCATCACACTCATGAGTGGTCATGGCAGACTATACTGATGGGCTTTTGTTTCCTTCTCTTTCTTCTCCTCACAAGGCACATTAGCATGAAAAAGCCAAAATTGTTCTGGGTGTCAGCTGGAGCTCCTTTGGTGTCGGTCATTCTTTCAACCATTTTGGTCTTTGCATTTAAGGCGGATCGCCATGGCATCACTGTTATAGGAAAGTTGCAAGAAGGATTGAACCCACCTTCATGGAACATGCTTCGATTTGAAGGGTCACACCTTGGCCTTGTTATTAAGACTGGACTCGTCACCGGCATCATCTCTCTCACTGAAGGAATCGCAGTAGGGCGAACTTTTGCAGCTATAAAAGACTACCGCGTCGATGGTAACAAGGAAATGATTGCAATCGGCCTCATGAATGTCGTCGGCTCTTTCACTTCTTGCTATATCACAACAGGTGCATTTTCAAGGTCAGCGGTGAACCATAATGCTGGAGCAAAGACCGCAGTGTCGAACATCATAATGTCAGTGACGATAATGGTGACGTTGTTGTTTCTGATGCCTCTGTTTCAGTGTACACCCAATCTGGTGTTGGCTGCCATCATCGTCACCGCCGTTGTCGGCCTTGTCGACATCCCGGCCGCCTATAGCATTTGGAAGGTCGACAAGTTCGATTTCGTTGTGATGCTTTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAACATGGCCTCGCCATTGCTGTTGGCATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGTGATGTTGGGGAACATAGCTGGAACAGATATATATAGAAACCTTCACCATTACAAGGATGCAATGAGTGTCAAAGGCTTTCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAACACCACATATCTCAATGAAAGGATTTTAAGATGGATCGAAGATTATGAAGCTGATCAAGATCATATTAAGGAGGACTCCAGCCTTCAGTTTGTTGTTTTAGAATTGTCAGCTGTGAGTGCTATAGACACTAGTGGAGTCCTACTCTTCAAAGACCTAAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTAGTGTTGGTGAACCCATTGGGTGAAGTTTTGGAAAAGTTGCAAAAGGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTATTCTTGACAGTGGGAGAGGCCATTGCTTCACTAGCAACAACAATGAAGGGACAATCCTCAACTATATAG 1977 44.92 MGDEENNGKGSSRLAPPRGPAEHCVEIVHPVVPPPRRSWIQKLRNRLKEIFFPDDPLRQFKGQPPARKWVIGGQYIFPILQWGPHYNLSLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQQVSPIKDPILFLQLGFTSTFFAGLFQALLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTHEWSWQTILMGFCFLLFLLLTRHISMKKPKLFWVSAGAPLVSVILSTILVFAFKADRHGITVIGKLQEGLNPPSWNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQCTPNLVLAAIIVTAVVGLVDIPAAYSIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIAGTDIYRNLHHYKDAMSVKGFLILSIEAPINFANTTYLNERILRWIEDYEADQDHIKEDSSLQFVVLELSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPLGEVLEKLQKADENQEILRPNNVFLTVGEAIASLATTMKGQSSTI 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1496493 1507860 - CcPI632755_11g001440.1 Cco11g0144 191380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0144 658 SUPERFAMILY SpoIIaa-like 528 647 IPR036513 -
Cco11g0144 658 CDD STAS_SulP_like_sulfate_transporter 523 640 - -
Cco11g0144 658 Gene3D STAS domain 502 650 IPR036513 -
Cco11g0144 658 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020(InterPro)
Cco11g0144 658 MobiDBLite consensus disorder prediction 1 20 - -
Cco11g0144 658 NCBIfam sulfate permease 78 642 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco11g0144 658 ProSiteProfiles STAS domain profile. 522 647 IPR002645 -
Cco11g0144 658 Pfam STAS domain 526 643 IPR002645 -
Cco11g0144 658 FunFam Sulfate transporter 31 502 650 - -
Cco11g0144 658 PANTHER SULFATE TRANSPORTER 66 645 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco11g0144 658 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0702 Cco-Chr9:6307169 Cco11g0144 Cco-Chr11:1496493 2.00E-208 dispersed
Cco09g1700 Cco-Chr9:28186202 Cco11g0144 Cco-Chr11:1496493 4.60E-175 dispersed
Cco09g2217 Cco-Chr9:36508656 Cco11g0144 Cco-Chr11:1496493 7.60E-91 dispersed
Cco11g0144 Cco-Chr11:1496493 Cco11g1584 Cco-Chr11:28730051 4.90E-185 dispersed
Cco11g0144 Cco-Chr11:1496493 Cco09g0216 Cco-Chr9:1916017 1.60E-228 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0144 K17471 - csv:101219163 1157.51