Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0157 ATGAATGAGACGGAAAAAAAGGTTGGCCGGACACAGTCACACACAACCACACAATTCTTCGAACAGCGGCTGGTTTGTATCCAGACCTATTTTCCCATTTTCCCTTTTGCCTCTGCAATGGGCGCTTTTGGAATTGTGTTCTTCTTCCTCCTCCTTGTCGCTGTGTTTCCTTTGTCTTCTCCTTTGTCCGAGAACGAAGCTCTCTTGAAACTCAAACAATCCTTCACCCATTCCGAATCCTTGAATTCTTGGAACTCTGACTCTGTCCCTTGCTCCGCTCGATGGACCGGCATTATCTGTAATAGAGGCGTTATCACCGGCCTACATCTCTCCGGCCTCCAACTCTCCGGAAAAATCGACGTCGAAGCTCTTCTTCAGCTTCGTAGCCTTCGAACCATTAGCTTCGTTAACAACAAATTCTCCGGTCCGATTCCGGAATTCAACAAAATCGGAGTTCTAAAATCTCTTCTCTTAACCGGAAACCACTTCTCCGGCGCTATCCCAAACGATTTCTTCTCTTCCTTAACTTCTTTAAAAAAGGTTTGGCTCTCTTCAAACAATTTCTCCGGTAACATTCCAAATTCTCTAGCTCAACTCTCCCATTTAATCGAACTCCATCTCGAGAGCAACCAATTTTCAGGACCAATCCCAAATCTCAAATACGCTTCAATTATAAAATCCCTTGATCTCTCCAACAATAAACTCGAAGGTCAAATTCCCGAAACCCTTTCAAAATTCGACGCAAAAGCATTCGCTGGAAACGAAGGCCTTTGCGGAAACCCACTCCCGAAATCTTGCGGCGAAAACGCTGGACGAATTTCTGAAGAGAAACCCCTTTCTTCTTCTTCACCTCCTGGGGAATCGCAAAGCAATGTTTCGAAATTGGTTGTGGCTTCATTGATAGCCGTGGTTGTATTTCTAATGGTGTTTATATTTTTGAGTGCTTCAAAGCGCAGAGAAGATGAGTTCAGTGTATTGGGGAGAGAACAAATGGAGGAAGTTGTGGAGGTTCATGTACCGAGTTCCGGCGGCGGCCATGATAAGCAATCCAGCAGAAGAGGTGGGGATTCTAAGAGAGGATCGCAACAGGGGAAGGCGGGGATGAGCGATCTCGTGGTGGTTAATGAAGATAAAGGGACGTTTGGTTTGGCGGATTTGATGAAGGCTGCGGCGGAGGTTTTAGGGAATGGTGGGTTGGGTTCGGCTTACAAGGCGGTTATGTCCAATGGGTTGTCGGTGGTGGTGAAGAGAATGAGAGAGATGAATAAATTAGGGAAAGATGGGTTCGATGCGGAGATGAGACGACTTGGAAGATTGCGCCATCAGAATATATTAACGCCTTTGGCTTATCATTACAGGAGAGAGGAGAAATTGCTTGTGTCCGAGTACATTCCAAAGGGTAGCCTCTTGTATGTGTTGCATGGTGATCGCGGAGCCTGCCATGCAGATCTCAATTGGGCCACTCGGTTAAGGATCGTGCAGGGGATTGCAAGGGGACTGGGGTTCCTCCATTCAGAATTTGCAACGTATGATCTGCCTCATGGAAATCTGAAATCCAGCAATGTTCTTCTAAGCGACAACTATGAGCCACTTTTGAGCGACTACGCATTCCATCCCCTTATCAATCCCAACAATGCAACTCAGGCAATGTTCGCTTACAAATCCCCTGAGTACGGGCAATATCAGGAAGTCTCTCCCAAGTCTGATGTTTATTGTCTTGGCATTATCATTCTCGAAATCATGACTAGTAAATTTCCTTCTCAATATCTTACAAATGGCAAGGGTGGTACTGATGTGGTGCAGTGGGTCTCATCTGCAATTTCTGAGAAGAGGGAGGCTGAACTCATTGACCCTGAGATTGCAAACGACACCGGTGTACTCAATCACATGGTCCAGCTTCTCATAATCGGCGCAGATTGCACCCACAATAATCCTCAGCAACGACCAGAAATGAGAGAAGCCATTAGGAGAATAGAAGAGATATGA 1986 46.02 MNETEKKVGRTQSHTTTQFFEQRLVCIQTYFPIFPFASAMGAFGIVFFFLLLVAVFPLSSPLSENEALLKLKQSFTHSESLNSWNSDSVPCSARWTGIICNRGVITGLHLSGLQLSGKIDVEALLQLRSLRTISFVNNKFSGPIPEFNKIGVLKSLLLTGNHFSGAIPNDFFSSLTSLKKVWLSSNNFSGNIPNSLAQLSHLIELHLESNQFSGPIPNLKYASIIKSLDLSNNKLEGQIPETLSKFDAKAFAGNEGLCGNPLPKSCGENAGRISEEKPLSSSSPPGESQSNVSKLVVASLIAVVVFLMVFIFLSASKRREDEFSVLGREQMEEVVEVHVPSSGGGHDKQSSRRGGDSKRGSQQGKAGMSDLVVVNEDKGTFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNKLGKDGFDAEMRRLGRLRHQNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHADLNWATRLRIVQGIARGLGFLHSEFATYDLPHGNLKSSNVLLSDNYEPLLSDYAFHPLINPNNATQAMFAYKSPEYGQYQEVSPKSDVYCLGIIILEIMTSKFPSQYLTNGKGGTDVVQWVSSAISEKREAELIDPEIANDTGVLNHMVQLLIIGADCTHNNPQQRPEMREAIRRIEEI 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1661938 1664370 + CcPI632755_11g001570.1 Cco11g0157 191393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0157 661 SUPERFAMILY Protein kinase-like (PK-like) 392 657 IPR011009 -
Cco11g0157 661 Pfam Leucine Rich Repeat 226 245 IPR001611 GO:0005515(InterPro)
Cco11g0157 661 MobiDBLite consensus disorder prediction 337 368 - -
Cco11g0157 661 FunFam Nuclear pore complex protein NUP107 62 218 - -
Cco11g0157 661 Pfam Leucine rich repeat N-terminal domain 63 101 IPR013210 -
Cco11g0157 661 CDD STKc_IRAK 394 661 - -
Cco11g0157 661 Gene3D Ribonuclease Inhibitor 62 220 IPR032675 -
Cco11g0157 661 Pfam Protein kinase domain 392 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0157 661 SUPERFAMILY L domain-like 62 245 - -
Cco11g0157 661 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515(InterPro)
Cco11g0157 661 ProSiteProfiles Protein kinase domain profile. 388 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0157 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 63 661 IPR046959 -
Cco11g0157 661 Gene3D Phosphorylase Kinase; domain 1 356 463 - -
Cco11g0157 661 Gene3D Ribonuclease Inhibitor 221 264 IPR032675 -
Cco11g0157 661 MobiDBLite consensus disorder prediction 269 289 - -
Cco11g0157 661 Gene3D Transferase(Phosphotransferase) domain 1 464 661 - -
Cco11g0157 661 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1412 Cco-Chr8:26049743 Cco11g0157 Cco-Chr11:1661938 1.60E-99 dispersed
Cco11g0157 Cco-Chr11:1661938 Cco11g0287 Cco-Chr11:2900088 8.40E-68 dispersed
Cco11g0157 Cco-Chr11:1661938 Cco06g1604 Cco-Chr6:26615629 4.60E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87208 PF00069 Pkinase 4.60E-26 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0157 K28077 - csv:101215919 1078.93