Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0166 ATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCCAGCTGCTGCGAGGTTGATTCGCAGTCGTCGGAGGTGATGAAAGTAGTGGCGGCGAATAAGCCGAGTTCCTTCCAAAGGATTTCGAAACTGGATTTGAGTAACCCTAATTCCACTCTCTCTGAAGATCTTTCCATTTCTCTCGCCGGATCTGACATCCACGCTTTCACTCTCGCCGAATTAAAGCTCATCTCTCAGACCTTTTCTTCCTCAAACTTCCTTGGAGAAGGTGGATTCGGCCCCGTCTACAAAGGATTCCTCGATGACAATCTCAGGCCTGGCTTGTCTCCTCAGCCCGTCGCTATTAAACTCCTCGATTTGGATGGAACACAAGGCCACAGAGAATGGCTGACGGAGGTGATTTTTCTAGGACAGCTTAAGCACGCTCATCTAGTGAAGCTAATTGGATATTGCTGCGAAGACGAACATAGGATGCTTGTGTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAACTTTTCAAAAAATATTCGATCCCATTGCCATGGTCGACGAGAATGAAGATCGCTCTTGGAGCTGCCAAAGGTCTGGCCTTCCTCCACGAAGCAGATAAACCAGTCATTTACCGAGATTTCAAAGCCTCCAACATACTGCTCGACTCTGATTATACCGCGAAGCTGTCTGATTTTGGACTAGCCAAAGATGGTCCAGAAGGAGACAACACGCATGTCTCGACCCGAGTAATGGGGACGCATGGATATGCTGCGCCGGAGTATATAATGACGGGTCATTTGACGGCAATGAGTGACGTGTATAGCTTCGGAGTAGTGCTTTTGGAGCTGTTGACAGGGCGGCGGTCGGTGGAGAAGAGCAGCCGTAAGAGGCAGCAGAACTTGGCAGAGTGGGCGAGGCCGATGCTGAATGATCCAAGGAAGCTAAGCCGTATAATAGACCCAAGACTTGAAGGCCAATACTCGGAAATGGGAGCTCAGAAAGCAGCCACATTGGCTTACCAATGCTTGAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTCAAGGTATTAGAGCCGCTTAAGGATTTCGATGACATTTCTTCAGGCACCTTCGTTTATACGGTTCTCGCCCAAAACGATCTTCACAACAAACCAACGGGAAATTCAACTTTAGCAGATGCTAAAAAGTAA 1191 48.78 MAVKKMKWRSIFSSCCEVDSQSSEVMKVVAANKPSSFQRISKLDLSNPNSTLSEDLSISLAGSDIHAFTLAELKLISQTFSSSNFLGEGGFGPVYKGFLDDNLRPGLSPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRIIDPRLEGQYSEMGAQKAATLAYQCLSHRPKQRPTMSAVVKVLEPLKDFDDISSGTFVYTVLAQNDLHNKPTGNSTLADAKK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1711491 1713352 - CcPI632755_11g001660.1 Cco11g0166 191402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0166 396 Gene3D Transferase(Phosphotransferase) domain 1 163 371 - -
Cco11g0166 396 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0166 396 SUPERFAMILY Protein kinase-like (PK-like) 56 358 IPR011009 -
Cco11g0166 396 PANTHER OS01G0588500 PROTEIN-RELATED 55 361 IPR050823 -
Cco11g0166 396 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Cco11g0166 396 FunFam Probable serine/threonine-protein kinase PBL8 163 375 - -
Cco11g0166 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0166 396 CDD STKc_IRAK 86 360 - -
Cco11g0166 396 Gene3D Phosphorylase Kinase; domain 1 44 162 - -
Cco11g0166 396 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2276 Cco-Chr10:35605174 Cco11g0166 Cco-Chr11:1711491 2.60E-62 dispersed
Cco11g0166 Cco-Chr11:1711491 Cco11g1152 Cco-Chr11:22539620 2.80E-111 dispersed
Cco03g1516 Cco-Chr3:29755867 Cco11g0166 Cco-Chr11:1711491 2.00E-117 transposed
Cco05g1810 Cco-Chr5:26876733 Cco11g0166 Cco-Chr11:1711491 4.30E-126 transposed
Cco07g1203 Cco-Chr7:25890969 Cco11g0166 Cco-Chr11:1711491 5.60E-126 transposed
Cco11g0166 Cco-Chr11:1711491 Cco03g1559 Cco-Chr3:30230959 8.70E-169 wgd
Cco11g0166 Cco-Chr11:1711491 Cco09g0100 Cco-Chr9:870611 2.30E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87209 PF07714 PK_Tyr_Ser-Thr 9.90E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0166 - - - 0.0