Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0170 ATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAAAGGGTCAACAGCCCACGATTCTCGGGACCTATAACTCGTCGTGCACATTCCTTCAAGCGTAACAACAACAGCACTGACACTCATAGTAGTGCTAATTCAAACATCCTCAACAATAATGGGCTTAGTAGTCACCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCAAGTGGATGGCTTTGAATCTGCTTTGGAACGGAAGACAGCTCCACATGTTAGCCAGAGAAACCATGGGGGCGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGTTAAGGGAAAAAAGGAAATTGGGGCATTTGATGTTCATGATGTTCTGTGGTCTCTGCTTGTTTCTGGGTATTCTAAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATTGAGATCAACGAATCACACCAGGATACACCTGACTCCATCAAAAGTCAAAATCAAGTGGATCAAAATTCTCATAATCTTAGGCACAAGGAAGGGGAAGCTAGTTCTGAGCGAACTCTGATGATGGAATCAGGTGTAGTTGGTAGTCAAAATGGCATGGAGCATTCAGAAATTTGGATGAAACCTGACAGCGAGAACTTTGCTCCTTGCATCGATGAGGGAAGGCGCCGCAAAAAGCTTGATGCGAAGATAAACGGATACATTCTTGTAAATGCCAATGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTCATTGCAAAGGTTATGAAAGCAGCACTTGTCCTTCCTTCGCTTGATCATAAATCCTACTGGGCAGATGAAAGTGGCTTTAAAGATCTCTTCAATTGGCAACACTTTCTTGAGACTCTGGAAGATGATGTTTATATAGTAGAGACACTACCACCTGCCTATGCCGAATTAGTGCCTTTCAACAAAACACCAATTTCTTGGTCCAAGATTGGTTACTATAAAGCAGAGGTCCTCCCACTGCTGAAGCAGCACAAGGTGATGTATTTTACACACACGGATTCCCGGCTGGCTAACAATGGTCTCCCAAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCCAAGCGTTAAAATATTCGGCTCCAATTGAAGAACTGGGGAACACCTTGGTCTCTAGAATGCGACAGAATGGAAGCCCTTATATTGCTCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACAGGCTGCAGTCATAATTTGACAACAGCGGAAGATGATGAGTTGGGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACAGAGAGAAGGTTGCTTGGTGGCTGTCCACTGACTCCAAGGGAGACTTCTCTTTTGCTCAGAGGGTTGGGTTTTCCATCCAGCACCAGAATATACTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATGATTTCCCCAATATATATTCGCATTCTACACTTACCACAGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTGGCTGGCATCGACTATGTTGTTGCCCTTCAAAGCGATGTTTTTATTTATACATATGATGGAAATATGGCAAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGCAAATTTTGTCAAACTTGTTGATGAACTTGAGGAAGGAAAGATATCATGGAGAAAATTCAGTTTGAAAGTGAAAGCACTTCATAAAAATCGGGCGGGGGCTCCATATCTTAGAGAAGCTGGAGAAATCCCAAAGTTGGAGGAGAGTTTTTATGCAAATCCCCTTCCAGGATGCATTTGTGATAAAACCAAAGAAAAATCTGGTGCAGAACTTAGTTGCCTTCATATCTTTCATAGCAGTGGTAGCAGGAAACTGGGGAATCTGCTGGTTCCATATCAAACATCTTTTGCTTGCAAAAGGATACTGTTGGAACAACTAAATAAAGCAAAGGCACCAATTATTCTGAAAAGAGATGGTGTCTCAACAGAAGAGAGGAGAAGGGTTTTAGTGATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTACTTCACTTTTCCTACAAACCACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCTGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATACTCTTCAAAAGACGATGAGGGTGGCAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGCTTAAAGGATTCTCTAGTCCTCCTCAAGTAAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCTGGGAGATTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTAGGGTAGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTATGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGGAAAAGCATCTTCTTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTACTGTATCCTAACTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTCTTGAATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATTTGGTGGAAGACATAGGTTGCATGTCTTTAGATCAGAGTGTAGCTGAAGATGTGCATGAGGGAAAAGAGGAATATTTTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGACGAAAATTATCAATGTCTGAAAAAGGGCATTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTATTACTGAACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAAGCAAGCAGTTGATAGACGTTTTCCGAATGCTGTTCTACCTCTCCTTCGCTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTATTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGGCAGAGGAGGCATCGTTCTCTGGCCAGGATGATTCCGCGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGCTCAACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATTGTTTGTTCCAATCTGGGTATCCTGTCAGCTTCAGTTTTATCGATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGTTTGCTGATGCCAGTGTTACCAAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAATCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAAAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCGTATCATGCGGAGCTAGTTGGAGAGAGTTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCTGCCAAGGGTTTCCTAAAAGTGCTTAGATTATACTTGGACTCTCTCTGCTCTAACCTTCGTTCACATACAATTACTAATGTACAATCAAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCGTGACCGGCCATTTTTGAAGAGATGTCAGAGACAAAGGGCTGGCAGACAGAAGCAGAAGAGGCAGAGAGTTGCAGTCATAATATTAGCAAAGAGAAAGAAAGGAGTAACTCAATGGCAAGAGCTGGAACATCAAGCTTTGATCTTTAAGTACATGGTCTCCGGCATTCCTGTCCCTCCTGATCTGCTTTTCACCATTAAAAGAACTTCTTTGTCTTTGGATACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATTGATCCGGAGCCTGGAAGATGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAAAGACATATGCATAGAGGTAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTTTAAACTCTAATCCATCATCATCATCATCACTTACCCATAACTCCACTCATTCCTTTGCTTCACTCACCAACTCTGAAACACATCCCCATCCCCATCCTTTTCTCTATCAACATGCTTCTGCTTCTTCTGCTCATTCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAAGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCCATGGAAGATTCTTGGCAGCTAACTCCTTTGACAATGAGTAGCTCTTCCTCATCTTCCAGATACAAGAATGGTTCTGCTTTAGAAGGTGATTACTCTTCTTACTTGCAGCTACAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGGTTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAATCTTGGGTTGATTTGGATGATAAGTCATCCAACAATACTGGCGCAGTTTCTGCAACTAGGCTTTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTAA 5478 42.35 MVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSTDTHSSANSNILNNNGLSSHHEIDLPVNSPRSEAFRSTVQVDGFESALERKTAPHVSQRNHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIEINESHQDTPDSIKSQNQVDQNSHNLRHKEGEASSERTLMMESGVVGSQNGMEHSEIWMKPDSENFAPCIDEGRRRKKLDAKINGYILVNANGGLNQMRFGICDMVVIAKVMKAALVLPSLDHKSYWADESGFKDLFNWQHFLETLEDDVYIVETLPPAYAELVPFNKTPISWSKIGYYKAEVLPLLKQHKVMYFTHTDSRLANNGLPSSIQKLRCRVNFQALKYSAPIEELGNTLVSRMRQNGSPYIALHLRYEKDMLAFTGCSHNLTTAEDDELGRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPSSTRIYLVAGEAYGNGSMQYLKDDFPNIYSHSTLTTEEELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKANFVKLVDELEEGKISWRKFSLKVKALHKNRAGAPYLREAGEIPKLEESFYANPLPGCICDKTKEKSGAELSCLHIFHSSGSRKLGNLLVPYQTSFACKRILLEQLNKAKAPIILKRDGVSTEERRRVLVMDKNEETGSPGWGTSLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSGKASSYSSLSRYILTTRRCYCILTRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNEEDLVEDIGCMSLDQSVAEDVHEGKEEYFQRMGDENHVEHQMLDENYQCLKKGISDDIVATLDPEPEVVTAKIESITEHKENHDIDVDDFTRNKQAVDRRFPNAVLPLLRYYQYESSESSSSIQGSPSEDRNFRSDADDTEAEEASFSGQDDSADLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKRCQRQRAGRQKQKRQRVAVIILAKRKKGVTQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSSSLTHNSTHSFASLTNSETHPHPHPFLYQHASASSAHSSLLPDYRRNRYVYGGKEEDVDEQPFVREEQHSGNMRGFSASSMEDSWQLTPLTMSSSSSSSRYKNGSALEGDYSSYLQLQSFGKYNEMQSKMEREEPQKVMHHFFDEWSAKDRESWVDLDDKSSNNTGAVSATRLSMSIPNHDFSSIFTSNKHNEN 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1722325 1739649 + CcPI632755_11g001700.1 Cco11g0170 191406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0170 1825 SMART QLQ_2 1504 1535 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 Gene3D - 1267 1432 IPR043153 -
Cco11g0170 1825 Pfam WRC 1571 1613 IPR014977 -
Cco11g0170 1825 CDD O-FucT_plant 242 563 IPR024709 -
Cco11g0170 1825 ProSiteProfiles WRC domain profile. 1570 1614 IPR014977 -
Cco11g0170 1825 PANTHER OS02G0726500 PROTEIN-RELATED 134 634 - GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER)
Cco11g0170 1825 MobiDBLite consensus disorder prediction 163 178 - -
Cco11g0170 1825 SMART DENN_cls 972 1370 IPR001194 -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 163 190 - -
Cco11g0170 1825 ProSiteProfiles QLQ domain profile. 1500 1535 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 MobiDBLite consensus disorder prediction 30 54 - -
Cco11g0170 1825 ProSiteProfiles Tripartite DENN domain profile. 847 1508 IPR037516 -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1141 1171 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1 22 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1 54 - -
Cco11g0170 1825 Pfam QLQ 1504 1533 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 Pfam GDP-fucose protein O-fucosyltransferase 242 557 IPR019378 -
Cco11g0170 1825 Pfam DENN (AEX-3) domain 1270 1369 IPR001194 -
Cco11g0170 1825 Pfam uDENN domain 865 942 IPR005113 -
Cco11g0170 1825 Gene3D - 802 1009 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1621 1658 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1621 1653 - -
Cco11g0170 1825 FunFam O-fucosyltransferase 28 373 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1484 Cco-Chr7:28990710 Cco11g0170 Cco-Chr11:1722325 1.00E-48 dispersed
Cco08g1850 Cco-Chr8:29511862 Cco11g0170 Cco-Chr11:1722325 4.50E-29 dispersed
Cco10g1247 Cco-Chr10:25230427 Cco11g0170 Cco-Chr11:1722325 5.30E-74 dispersed
Cco10g1912 Cco-Chr10:32711410 Cco11g0170 Cco-Chr11:1722325 2.10E-27 dispersed
Cco10g2156 Cco-Chr10:34730353 Cco11g0170 Cco-Chr11:1722325 2.90E-171 dispersed
Cco11g0170 Cco-Chr11:1722325 Cco11g0652 Cco-Chr11:7112009 1.30E-158 dispersed
Cco06g0136 Cco-Chr6:1379467 Cco11g0170 Cco-Chr11:1722325 1.10E-139 transposed
Cco11g0170 Cco-Chr11:1722325 Cco03g1571 Cco-Chr3:30341709 1.70E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60217 PF10250 O-FucT 1.30E-69 CL0113 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0170 - - - 0.0