Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0170 | ATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAAAGGGTCAACAGCCCACGATTCTCGGGACCTATAACTCGTCGTGCACATTCCTTCAAGCGTAACAACAACAGCACTGACACTCATAGTAGTGCTAATTCAAACATCCTCAACAATAATGGGCTTAGTAGTCACCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCAAGTGGATGGCTTTGAATCTGCTTTGGAACGGAAGACAGCTCCACATGTTAGCCAGAGAAACCATGGGGGCGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGTTAAGGGAAAAAAGGAAATTGGGGCATTTGATGTTCATGATGTTCTGTGGTCTCTGCTTGTTTCTGGGTATTCTAAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATTGAGATCAACGAATCACACCAGGATACACCTGACTCCATCAAAAGTCAAAATCAAGTGGATCAAAATTCTCATAATCTTAGGCACAAGGAAGGGGAAGCTAGTTCTGAGCGAACTCTGATGATGGAATCAGGTGTAGTTGGTAGTCAAAATGGCATGGAGCATTCAGAAATTTGGATGAAACCTGACAGCGAGAACTTTGCTCCTTGCATCGATGAGGGAAGGCGCCGCAAAAAGCTTGATGCGAAGATAAACGGATACATTCTTGTAAATGCCAATGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTCATTGCAAAGGTTATGAAAGCAGCACTTGTCCTTCCTTCGCTTGATCATAAATCCTACTGGGCAGATGAAAGTGGCTTTAAAGATCTCTTCAATTGGCAACACTTTCTTGAGACTCTGGAAGATGATGTTTATATAGTAGAGACACTACCACCTGCCTATGCCGAATTAGTGCCTTTCAACAAAACACCAATTTCTTGGTCCAAGATTGGTTACTATAAAGCAGAGGTCCTCCCACTGCTGAAGCAGCACAAGGTGATGTATTTTACACACACGGATTCCCGGCTGGCTAACAATGGTCTCCCAAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCCAAGCGTTAAAATATTCGGCTCCAATTGAAGAACTGGGGAACACCTTGGTCTCTAGAATGCGACAGAATGGAAGCCCTTATATTGCTCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACAGGCTGCAGTCATAATTTGACAACAGCGGAAGATGATGAGTTGGGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACAGAGAGAAGGTTGCTTGGTGGCTGTCCACTGACTCCAAGGGAGACTTCTCTTTTGCTCAGAGGGTTGGGTTTTCCATCCAGCACCAGAATATACTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATGATTTCCCCAATATATATTCGCATTCTACACTTACCACAGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTGGCTGGCATCGACTATGTTGTTGCCCTTCAAAGCGATGTTTTTATTTATACATATGATGGAAATATGGCAAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGCAAATTTTGTCAAACTTGTTGATGAACTTGAGGAAGGAAAGATATCATGGAGAAAATTCAGTTTGAAAGTGAAAGCACTTCATAAAAATCGGGCGGGGGCTCCATATCTTAGAGAAGCTGGAGAAATCCCAAAGTTGGAGGAGAGTTTTTATGCAAATCCCCTTCCAGGATGCATTTGTGATAAAACCAAAGAAAAATCTGGTGCAGAACTTAGTTGCCTTCATATCTTTCATAGCAGTGGTAGCAGGAAACTGGGGAATCTGCTGGTTCCATATCAAACATCTTTTGCTTGCAAAAGGATACTGTTGGAACAACTAAATAAAGCAAAGGCACCAATTATTCTGAAAAGAGATGGTGTCTCAACAGAAGAGAGGAGAAGGGTTTTAGTGATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTACTTCACTTTTCCTACAAACCACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCTGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATACTCTTCAAAAGACGATGAGGGTGGCAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGCTTAAAGGATTCTCTAGTCCTCCTCAAGTAAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCTGGGAGATTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTAGGGTAGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTATGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGGAAAAGCATCTTCTTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTACTGTATCCTAACTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTCTTGAATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATTTGGTGGAAGACATAGGTTGCATGTCTTTAGATCAGAGTGTAGCTGAAGATGTGCATGAGGGAAAAGAGGAATATTTTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGACGAAAATTATCAATGTCTGAAAAAGGGCATTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTATTACTGAACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAAGCAAGCAGTTGATAGACGTTTTCCGAATGCTGTTCTACCTCTCCTTCGCTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTATTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGGCAGAGGAGGCATCGTTCTCTGGCCAGGATGATTCCGCGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGCTCAACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATTGTTTGTTCCAATCTGGGTATCCTGTCAGCTTCAGTTTTATCGATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGTTTGCTGATGCCAGTGTTACCAAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAATCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAAAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCGTATCATGCGGAGCTAGTTGGAGAGAGTTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCTGCCAAGGGTTTCCTAAAAGTGCTTAGATTATACTTGGACTCTCTCTGCTCTAACCTTCGTTCACATACAATTACTAATGTACAATCAAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCGTGACCGGCCATTTTTGAAGAGATGTCAGAGACAAAGGGCTGGCAGACAGAAGCAGAAGAGGCAGAGAGTTGCAGTCATAATATTAGCAAAGAGAAAGAAAGGAGTAACTCAATGGCAAGAGCTGGAACATCAAGCTTTGATCTTTAAGTACATGGTCTCCGGCATTCCTGTCCCTCCTGATCTGCTTTTCACCATTAAAAGAACTTCTTTGTCTTTGGATACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATTGATCCGGAGCCTGGAAGATGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAAAGACATATGCATAGAGGTAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTTTAAACTCTAATCCATCATCATCATCATCACTTACCCATAACTCCACTCATTCCTTTGCTTCACTCACCAACTCTGAAACACATCCCCATCCCCATCCTTTTCTCTATCAACATGCTTCTGCTTCTTCTGCTCATTCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAAGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCCATGGAAGATTCTTGGCAGCTAACTCCTTTGACAATGAGTAGCTCTTCCTCATCTTCCAGATACAAGAATGGTTCTGCTTTAGAAGGTGATTACTCTTCTTACTTGCAGCTACAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGGTTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAATCTTGGGTTGATTTGGATGATAAGTCATCCAACAATACTGGCGCAGTTTCTGCAACTAGGCTTTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTAA | 5478 | 42.35 | MVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSTDTHSSANSNILNNNGLSSHHEIDLPVNSPRSEAFRSTVQVDGFESALERKTAPHVSQRNHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIEINESHQDTPDSIKSQNQVDQNSHNLRHKEGEASSERTLMMESGVVGSQNGMEHSEIWMKPDSENFAPCIDEGRRRKKLDAKINGYILVNANGGLNQMRFGICDMVVIAKVMKAALVLPSLDHKSYWADESGFKDLFNWQHFLETLEDDVYIVETLPPAYAELVPFNKTPISWSKIGYYKAEVLPLLKQHKVMYFTHTDSRLANNGLPSSIQKLRCRVNFQALKYSAPIEELGNTLVSRMRQNGSPYIALHLRYEKDMLAFTGCSHNLTTAEDDELGRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPSSTRIYLVAGEAYGNGSMQYLKDDFPNIYSHSTLTTEEELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKANFVKLVDELEEGKISWRKFSLKVKALHKNRAGAPYLREAGEIPKLEESFYANPLPGCICDKTKEKSGAELSCLHIFHSSGSRKLGNLLVPYQTSFACKRILLEQLNKAKAPIILKRDGVSTEERRRVLVMDKNEETGSPGWGTSLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSGKASSYSSLSRYILTTRRCYCILTRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNEEDLVEDIGCMSLDQSVAEDVHEGKEEYFQRMGDENHVEHQMLDENYQCLKKGISDDIVATLDPEPEVVTAKIESITEHKENHDIDVDDFTRNKQAVDRRFPNAVLPLLRYYQYESSESSSSIQGSPSEDRNFRSDADDTEAEEASFSGQDDSADLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKRCQRQRAGRQKQKRQRVAVIILAKRKKGVTQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSSSLTHNSTHSFASLTNSETHPHPHPFLYQHASASSAHSSLLPDYRRNRYVYGGKEEDVDEQPFVREEQHSGNMRGFSASSMEDSWQLTPLTMSSSSSSSRYKNGSALEGDYSSYLQLQSFGKYNEMQSKMEREEPQKVMHHFFDEWSAKDRESWVDLDDKSSNNTGAVSATRLSMSIPNHDFSSIFTSNKHNEN | 1825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1722325 | 1739649 | + | CcPI632755_11g001700.1 | Cco11g0170 | 191406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0170 | 1825 | SMART | QLQ_2 | 1504 | 1535 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco11g0170 | 1825 | Gene3D | - | 1267 | 1432 | IPR043153 | - | |
Cco11g0170 | 1825 | Pfam | WRC | 1571 | 1613 | IPR014977 | - | |
Cco11g0170 | 1825 | CDD | O-FucT_plant | 242 | 563 | IPR024709 | - | |
Cco11g0170 | 1825 | ProSiteProfiles | WRC domain profile. | 1570 | 1614 | IPR014977 | - | |
Cco11g0170 | 1825 | PANTHER | OS02G0726500 PROTEIN-RELATED | 134 | 634 | - | GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER) | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 163 | 178 | - | - | |
Cco11g0170 | 1825 | SMART | DENN_cls | 972 | 1370 | IPR001194 | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 163 | 190 | - | - | |
Cco11g0170 | 1825 | ProSiteProfiles | QLQ domain profile. | 1500 | 1535 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 30 | 54 | - | - | |
Cco11g0170 | 1825 | ProSiteProfiles | Tripartite DENN domain profile. | 847 | 1508 | IPR037516 | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 1141 | 1171 | - | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cco11g0170 | 1825 | Pfam | QLQ | 1504 | 1533 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco11g0170 | 1825 | Pfam | GDP-fucose protein O-fucosyltransferase | 242 | 557 | IPR019378 | - | |
Cco11g0170 | 1825 | Pfam | DENN (AEX-3) domain | 1270 | 1369 | IPR001194 | - | |
Cco11g0170 | 1825 | Pfam | uDENN domain | 865 | 942 | IPR005113 | - | |
Cco11g0170 | 1825 | Gene3D | - | 802 | 1009 | - | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 1621 | 1658 | - | - | |
Cco11g0170 | 1825 | MobiDBLite | consensus disorder prediction | 1621 | 1653 | - | - | |
Cco11g0170 | 1825 | FunFam | O-fucosyltransferase 28 | 373 | 567 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1484 | Cco-Chr7:28990710 | Cco11g0170 | Cco-Chr11:1722325 | 1.00E-48 | dispersed | |
Cco08g1850 | Cco-Chr8:29511862 | Cco11g0170 | Cco-Chr11:1722325 | 4.50E-29 | dispersed | |
Cco10g1247 | Cco-Chr10:25230427 | Cco11g0170 | Cco-Chr11:1722325 | 5.30E-74 | dispersed | |
Cco10g1912 | Cco-Chr10:32711410 | Cco11g0170 | Cco-Chr11:1722325 | 2.10E-27 | dispersed | |
Cco10g2156 | Cco-Chr10:34730353 | Cco11g0170 | Cco-Chr11:1722325 | 2.90E-171 | dispersed | |
Cco11g0170 | Cco-Chr11:1722325 | Cco11g0652 | Cco-Chr11:7112009 | 1.30E-158 | dispersed | |
Cco06g0136 | Cco-Chr6:1379467 | Cco11g0170 | Cco-Chr11:1722325 | 1.10E-139 | transposed | |
Cco11g0170 | Cco-Chr11:1722325 | Cco03g1571 | Cco-Chr3:30341709 | 1.70E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60217 | PF10250 | O-FucT | 1.30E-69 | CL0113 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0170 | - | - | - | 0.0 |