Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0170 ATGGTTCCACAGCGCCACCACAACAGCAACGATGGCGTTTCTCAAAGGGTCAACAGCCCACGATTCTCGGGACCTATAACTCGTCGTGCACATTCCTTCAAGCGTAACAACAACAGCACTGACACTCATAGTAGTGCTAATTCAAACATCCTCAACAATAATGGGCTTAGTAGTCACCATGAGATTGATCTTCCTGTGAACTCACCCAGATCAGAAGCTTTCAGAAGCACGGTTCAAGTGGATGGCTTTGAATCTGCTTTGGAACGGAAGACAGCTCCACATGTTAGCCAGAGAAACCATGGGGGCGTTGCTGCTAAAAGTTTGTTAAATCCTGGTTTTGTTTCTCTGGACTTTAGGTTAAGGGAAAAAAGGAAATTGGGGCATTTGATGTTCATGATGTTCTGTGGTCTCTGCTTGTTTCTGGGTATTCTAAAGATCTGCATGAATGGTTGGTTTGGATCAGTCATTGAGATCAACGAATCACACCAGGATACACCTGACTCCATCAAAAGTCAAAATCAAGTGGATCAAAATTCTCATAATCTTAGGCACAAGGAAGGGGAAGCTAGTTCTGAGCGAACTCTGATGATGGAATCAGGTGTAGTTGGTAGTCAAAATGGCATGGAGCATTCAGAAATTTGGATGAAACCTGACAGCGAGAACTTTGCTCCTTGCATCGATGAGGGAAGGCGCCGCAAAAAGCTTGATGCGAAGATAAACGGATACATTCTTGTAAATGCCAATGGTGGCTTGAATCAGATGAGATTTGGGATCTGTGATATGGTTGTCATTGCAAAGGTTATGAAAGCAGCACTTGTCCTTCCTTCGCTTGATCATAAATCCTACTGGGCAGATGAAAGTGGCTTTAAAGATCTCTTCAATTGGCAACACTTTCTTGAGACTCTGGAAGATGATGTTTATATAGTAGAGACACTACCACCTGCCTATGCCGAATTAGTGCCTTTCAACAAAACACCAATTTCTTGGTCCAAGATTGGTTACTATAAAGCAGAGGTCCTCCCACTGCTGAAGCAGCACAAGGTGATGTATTTTACACACACGGATTCCCGGCTGGCTAACAATGGTCTCCCAAGTTCTATACAGAAGTTGAGATGTCGTGTCAATTTCCAAGCGTTAAAATATTCGGCTCCAATTGAAGAACTGGGGAACACCTTGGTCTCTAGAATGCGACAGAATGGAAGCCCTTATATTGCTCTTCATTTGAGGTATGAGAAGGATATGCTTGCATTTACAGGCTGCAGTCATAATTTGACAACAGCGGAAGATGATGAGTTGGGTAGAATGCGTTATGAAGTTGCCCATTGGAAAGAGAAGGAAATCAACGGGACAGAGAGAAGGTTGCTTGGTGGCTGTCCACTGACTCCAAGGGAGACTTCTCTTTTGCTCAGAGGGTTGGGTTTTCCATCCAGCACCAGAATATACTTGGTAGCTGGTGAGGCTTATGGAAATGGAAGTATGCAATATCTTAAGGATGATTTCCCCAATATATATTCGCATTCTACACTTACCACAGAAGAAGAGTTGAATCCTTTCAAGAATCACCAGAACATGTTGGCTGGCATCGACTATGTTGTTGCCCTTCAAAGCGATGTTTTTATTTATACATATGATGGAAATATGGCAAAGGCAATTCAAGGTCACAGGCGTTTTGAGGGCTTCAAGAAGACCATAAGTCCAGACAAGGCAAATTTTGTCAAACTTGTTGATGAACTTGAGGAAGGAAAGATATCATGGAGAAAATTCAGTTTGAAAGTGAAAGCACTTCATAAAAATCGGGCGGGGGCTCCATATCTTAGAGAAGCTGGAGAAATCCCAAAGTTGGAGGAGAGTTTTTATGCAAATCCCCTTCCAGGATGCATTTGTGATAAAACCAAAGAAAAATCTGGTGCAGAACTTAGTTGCCTTCATATCTTTCATAGCAGTGGTAGCAGGAAACTGGGGAATCTGCTGGTTCCATATCAAACATCTTTTGCTTGCAAAAGGATACTGTTGGAACAACTAAATAAAGCAAAGGCACCAATTATTCTGAAAAGAGATGGTGTCTCAACAGAAGAGAGGAGAAGGGTTTTAGTGATGGATAAGAACGAAGAGACGGGGAGCCCTGGTTGGGGTACTTCACTTTTCCTACAAACCACTGAAGATGTTGCAAGAGCTGTGGCTGCTGCAGCTGCTGCTGCAACCGATGCTCGCTCTCCTCGTCCTTCTGTTATATACTCTTCAAAAGACGATGAGGGTGGCAGTCCACTTCAGAGACTGCAGCGTCAAGTTAATAAAGTGCTTAAAGGATTCTCTAGTCCTCCTCAAGTAAAAACTGCAGGAACCTACAATCCTGAAGTTCTCACTACCCAAAAGCGTCAGTGGGCGAATTTCCAGTTGCAGTACTTGGACCATCGATCTCAGAAGGAGCCAACTAGGATTTTTGAGAGCATGGTTGTTGTTGGCCTTCATCCTAATTGTGATATTCAGGCACTTCAGAGGCAGTATGCTGCAAAGAAGTCAGAAGGTTCTGGGAGATTGCGAACTGCTCTTAATAATAGTCAGAGTCAATCTAGGGTAGAACCTCATCTTGAACCACAGGTCCTATTTGTTTACCCTCCAGAGAAACAGTTACCGCTCAAGTACAAGGACCTTCTTTCATTCTGCTTTCCAGGAGGTGTGGAGGTTCACGCTGTTGAAAAAACTCCTTCCATGAGTGAGTTGAACGAGATTCTTCTTGGGCAGGAACACTTTAAGCAAAGTGATCTCTCATTTGTATTCCGCTTACAGGTTGCTGATGATTCAACATTGTATGGATGCTGTGTTTTAGTTGAAGAATTAGTGCAGAAACCATCTGGGTTGCTTTCTGTTTCTGGAAAAGCATCTTCTTACTCATCCTTGAGCCGTTACATACTAACCACACGCAGATGCTACTGTATCCTAACTCGGTTGCCATTCTTCGAATTACATTTCGGTGTGTTGAATAGCATCTTCACCGAAGAAAGGCTGCAAAGATTAACAAAAGGTATTGGTGTCTTGAATTTGGAATCCACAGAGAATTTGAGCAATGAAGAAGATTTGGTGGAAGACATAGGTTGCATGTCTTTAGATCAGAGTGTAGCTGAAGATGTGCATGAGGGAAAAGAGGAATATTTTCAAAGAATGGGTGATGAAAATCATGTTGAGCATCAAATGCTCGACGAAAATTATCAATGTCTGAAAAAGGGCATTAGTGATGATATAGTTGCCACACTCGATCCAGAACCAGAGGTAGTTACAGCCAAAATAGAATCTATTACTGAACATAAGGAAAATCATGATATCGATGTTGATGATTTTACAAGAAACAAGCAAGCAGTTGATAGACGTTTTCCGAATGCTGTTCTACCTCTCCTTCGCTATTATCAATATGAAAGCTCTGAATCGTCCTCGAGTATTCAGGGGTCTCCGAGTGAAGACAGAAATTTCAGAAGTGATGCTGATGACACAGAGGCAGAGGAGGCATCGTTCTCTGGCCAGGATGATTCCGCGGACCTACTTGACATTCTTGAATGGGCCAAGGAAAATAAGAATGGATCATTACAAATCATATGCGAGTATTACCAGTTGCATTACCCTGCGAGGGGCTGTTCTGTTAAGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAGTATTATAGATCAGGCAAAACAGTTCTACATGTTGCTGGCTCAACCATTGATCCAAGATCATGCAGTACAAGTCTTGAATTAGCAGAGGCACAAGGTGCTCTCATGGTAGAGGAGGAAGCAAATGCCTTGTCAATATGGACTGTTGCAAGCATTTGTGGTTCTTTACGCCTTGAGCATATTTTATCAATTTTAGCTGGAGCGCTGCTGGAGAAGCAGATTGTGATTGTTTGTTCCAATCTGGGTATCCTGTCAGCTTCAGTTTTATCGATTATCCCTATGATTCGTCCCTACCAGTGGCAAAGTTTGCTGATGCCAGTGTTACCAAATGACATGCTGGACTTTTTGGATGCTCCTGTTCCTTACATAGTTGGTGTGAAAAATAAAACCAGTGAAGTACAATCAAAGTTAACCAATGCCGTTTTGGTTGATGTGAACAAAAACCAGGTCAAGGCCCCAACAATACCTCAGTTGCCAAAACAAAAGGAGTTATTCTCATCATTAAGACCGTATCATGCGGAGCTAGTTGGAGAGAGTTTTTTAGGGAGAAAGAGGCCAGTGCATGAATGCACTGATGTGCAGGTTGAAGCTGCCAAGGGTTTCCTAAAAGTGCTTAGATTATACTTGGACTCTCTCTGCTCTAACCTTCGTTCACATACAATTACTAATGTACAATCAAATGATGATAAGGTATCATTACTCTTGAAGGAGAGCTTCATTGAGTCGTTCCCAAGCCGTGACCGGCCATTTTTGAAGAGATGTCAGAGACAAAGGGCTGGCAGACAGAAGCAGAAGAGGCAGAGAGTTGCAGTCATAATATTAGCAAAGAGAAAGAAAGGAGTAACTCAATGGCAAGAGCTGGAACATCAAGCTTTGATCTTTAAGTACATGGTCTCCGGCATTCCTGTCCCTCCTGATCTGCTTTTCACCATTAAAAGAACTTCTTTGTCTTTGGATACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGATGTTGGATGGAACTATGTGCAAATGGGTTCAGGGAGGAAAATTGATCCGGAGCCTGGAAGATGTAGAAGAACAGATGGGAAAAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAATATTGTGAAAGACATATGCATAGAGGTAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAATAACAACTGCTTTAAACTCTAATCCATCATCATCATCATCACTTACCCATAACTCCACTCATTCCTTTGCTTCACTCACCAACTCTGAAACACATCCCCATCCCCATCCTTTTCTCTATCAACATGCTTCTGCTTCTTCTGCTCATTCATCCTTACTTCCAGATTACAGAAGAAACAGGTATGTTTATGGGGGGAAGGAAGAAGATGTTGATGAACAACCCTTTGTGAGGGAAGAACAACATTCAGGGAACATGAGAGGCTTCTCTGCTTCATCCATGGAAGATTCTTGGCAGCTAACTCCTTTGACAATGAGTAGCTCTTCCTCATCTTCCAGATACAAGAATGGTTCTGCTTTAGAAGGTGATTACTCTTCTTACTTGCAGCTACAGAGCTTTGGAAAATATAATGAGATGCAGAGTAAGATGGAAAGAGAGGAACCACAGAAGGTTATGCATCATTTTTTTGATGAATGGTCTGCTAAAGACAGAGAATCTTGGGTTGATTTGGATGATAAGTCATCCAACAATACTGGCGCAGTTTCTGCAACTAGGCTTTCAATGTCTATTCCTAACCATGACTTCTCCTCTATCTTCACTTCCAATAAGCATAATGAAAACTAA 5478 42.35 MVPQRHHNSNDGVSQRVNSPRFSGPITRRAHSFKRNNNSTDTHSSANSNILNNNGLSSHHEIDLPVNSPRSEAFRSTVQVDGFESALERKTAPHVSQRNHGGVAAKSLLNPGFVSLDFRLREKRKLGHLMFMMFCGLCLFLGILKICMNGWFGSVIEINESHQDTPDSIKSQNQVDQNSHNLRHKEGEASSERTLMMESGVVGSQNGMEHSEIWMKPDSENFAPCIDEGRRRKKLDAKINGYILVNANGGLNQMRFGICDMVVIAKVMKAALVLPSLDHKSYWADESGFKDLFNWQHFLETLEDDVYIVETLPPAYAELVPFNKTPISWSKIGYYKAEVLPLLKQHKVMYFTHTDSRLANNGLPSSIQKLRCRVNFQALKYSAPIEELGNTLVSRMRQNGSPYIALHLRYEKDMLAFTGCSHNLTTAEDDELGRMRYEVAHWKEKEINGTERRLLGGCPLTPRETSLLLRGLGFPSSTRIYLVAGEAYGNGSMQYLKDDFPNIYSHSTLTTEEELNPFKNHQNMLAGIDYVVALQSDVFIYTYDGNMAKAIQGHRRFEGFKKTISPDKANFVKLVDELEEGKISWRKFSLKVKALHKNRAGAPYLREAGEIPKLEESFYANPLPGCICDKTKEKSGAELSCLHIFHSSGSRKLGNLLVPYQTSFACKRILLEQLNKAKAPIILKRDGVSTEERRRVLVMDKNEETGSPGWGTSLFLQTTEDVARAVAAAAAAATDARSPRPSVIYSSKDDEGGSPLQRLQRQVNKVLKGFSSPPQVKTAGTYNPEVLTTQKRQWANFQLQYLDHRSQKEPTRIFESMVVVGLHPNCDIQALQRQYAAKKSEGSGRLRTALNNSQSQSRVEPHLEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAVEKTPSMSELNEILLGQEHFKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKPSGLLSVSGKASSYSSLSRYILTTRRCYCILTRLPFFELHFGVLNSIFTEERLQRLTKGIGVLNLESTENLSNEEDLVEDIGCMSLDQSVAEDVHEGKEEYFQRMGDENHVEHQMLDENYQCLKKGISDDIVATLDPEPEVVTAKIESITEHKENHDIDVDDFTRNKQAVDRRFPNAVLPLLRYYQYESSESSSSIQGSPSEDRNFRSDADDTEAEEASFSGQDDSADLLDILEWAKENKNGSLQIICEYYQLHYPARGCSVKFHPLEHLHPLEYYRSGKTVLHVAGSTIDPRSCSTSLELAEAQGALMVEEEANALSIWTVASICGSLRLEHILSILAGALLEKQIVIVCSNLGILSASVLSIIPMIRPYQWQSLLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHECTDVQVEAAKGFLKVLRLYLDSLCSNLRSHTITNVQSNDDKVSLLLKESFIESFPSRDRPFLKRCQRQRAGRQKQKRQRVAVIILAKRKKGVTQWQELEHQALIFKYMVSGIPVPPDLLFTIKRTSLSLDTPFISRLFPHQYPDVGWNYVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTITTALNSNPSSSSSLTHNSTHSFASLTNSETHPHPHPFLYQHASASSAHSSLLPDYRRNRYVYGGKEEDVDEQPFVREEQHSGNMRGFSASSMEDSWQLTPLTMSSSSSSSRYKNGSALEGDYSSYLQLQSFGKYNEMQSKMEREEPQKVMHHFFDEWSAKDRESWVDLDDKSSNNTGAVSATRLSMSIPNHDFSSIFTSNKHNEN 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1722325 1739649 + CcPI632755_11g001700.1 Cco11g0170 191406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0170 1825 SMART QLQ_2 1504 1535 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 Gene3D - 1267 1432 IPR043153 -
Cco11g0170 1825 Pfam WRC 1571 1613 IPR014977 -
Cco11g0170 1825 CDD O-FucT_plant 242 563 IPR024709 -
Cco11g0170 1825 ProSiteProfiles WRC domain profile. 1570 1614 IPR014977 -
Cco11g0170 1825 PANTHER OS02G0726500 PROTEIN-RELATED 134 634 - GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER)
Cco11g0170 1825 MobiDBLite consensus disorder prediction 163 178 - -
Cco11g0170 1825 SMART DENN_cls 972 1370 IPR001194 -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 163 190 - -
Cco11g0170 1825 ProSiteProfiles QLQ domain profile. 1500 1535 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 MobiDBLite consensus disorder prediction 30 54 - -
Cco11g0170 1825 ProSiteProfiles Tripartite DENN domain profile. 847 1508 IPR037516 -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1141 1171 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1 22 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1 54 - -
Cco11g0170 1825 Pfam QLQ 1504 1533 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco11g0170 1825 Pfam GDP-fucose protein O-fucosyltransferase 242 557 IPR019378 -
Cco11g0170 1825 Pfam DENN (AEX-3) domain 1270 1369 IPR001194 -
Cco11g0170 1825 Pfam uDENN domain 865 942 IPR005113 -
Cco11g0170 1825 Gene3D - 802 1009 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1621 1658 - -
Cco11g0170 1825 MobiDBLite consensus disorder prediction 1621 1653 - -
Cco11g0170 1825 FunFam O-fucosyltransferase 28 373 567 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0170 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1484 Cco-Chr7:28990710 Cco11g0170 Cco-Chr11:1722325 1.00E-48 dispersed
Cco08g1850 Cco-Chr8:29511862 Cco11g0170 Cco-Chr11:1722325 4.50E-29 dispersed
Cco10g1247 Cco-Chr10:25230427 Cco11g0170 Cco-Chr11:1722325 5.30E-74 dispersed
Cco10g1912 Cco-Chr10:32711410 Cco11g0170 Cco-Chr11:1722325 2.10E-27 dispersed
Cco10g2156 Cco-Chr10:34730353 Cco11g0170 Cco-Chr11:1722325 2.90E-171 dispersed
Cco11g0170 Cco-Chr11:1722325 Cco11g0652 Cco-Chr11:7112009 1.30E-158 dispersed
Cco06g0136 Cco-Chr6:1379467 Cco11g0170 Cco-Chr11:1722325 1.10E-139 transposed
Cco11g0170 Cco-Chr11:1722325 Cco03g1571 Cco-Chr3:30341709 1.70E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g90 . . . Bda11g01020 Bpe01g00613 . Bma07g00561 Bma11g00608 Cmo10g00789 Cmo11g00738 Cma05g01420 . Car05g01337 . Sed08g0909 Cpe04g01028 Cpe18g00326 Bhi02g01822 Tan09g1089 Cmetu05g1875 . Hepe09g0912 . . Cla11g00136 Cam11g0157 Cec11g0158 Cco11g0170 Clacu11g0293 . Cre11g0644 . . . . Lsi06g00321 Csa02g00019 . Cme02g00291 Blo08g00362 . Bda02g00370 . Bpe08g00542 Bpe13g01232 . . . Cmo05g01417 . Cma10g00759 Cma11g00725 Car10g00681 Car11g00602 . . . . . . . . . Cla03g01458 Cam03g1536 Cec03g1578 Cco03g1571 Clacu03g1560 Cmu03g2116 Cre03g1789 . Csa01g02970 Chy02g01265 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1912 . 1 413 GRF Transcription Factor Family AT2G36400 51.3 3.2e-70 262.7
Cco03g1571 . 3 105 GRF Transcription Factor Family AT3G13960 71.8 8.2e-42 168.3
Cco11g0170 . 1504 1604 GRF Transcription Factor Family AT3G13960 75.2 8.2e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003568 1 5 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60217 PF10250 O-FucT 1.30E-69 CL0113 Cco TF