Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0176 ATGCCGGTGCATCTCACGCCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGCAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTTGATTGTGAGATAATCGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCATCGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCGCCATATCAGCCGCCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCGAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACCTGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGATATTGAGAATGCTGAAACCAACTCTATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTGTTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTTTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAAAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGATGATGTCAAGTTTGGTGAAATAATAAGCAGCAAAATTTTCGATCAATTTCTTTTTAGGCTCAAAATTAAGGAGGAGACGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGATACCTTTCAGTGTGTGCTTTTCTAGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGCAGGAGCCGCATATTGATTATTACACACAAAACACAGAAACAACCATTACAGACAATGGAACATCATGA 1941 42.19 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIIFDCEIIGNPKSSAQSENFAQKASRSGNLEQPANGNGHLSARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISDIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSVELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIISSKIFDQFLFRLKIKEETYGDEQRVKNTVVKADKIPFSVCFSRLNAVEDFEHIKKQEPHIDYYTQNTETTITDNGTS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1770004 1774285 + CcPI632755_11g001760.1 Cco11g0176 191412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0176 646 FunFam Replication protein A subunit 428 616 - -
Cco11g0176 646 Gene3D - 176 286 IPR012340 -
Cco11g0176 646 FunFam Replication protein A subunit 289 427 - -
Cco11g0176 646 MobiDBLite consensus disorder prediction 114 139 - -
Cco11g0176 646 Pfam Replication protein A OB domain 300 404 IPR031657 -
Cco11g0176 646 Pfam Replication factor-A C terminal domain 462 606 IPR013955 -
Cco11g0176 646 SUPERFAMILY Nucleic acid-binding proteins 443 612 IPR012340 -
Cco11g0176 646 SUPERFAMILY Nucleic acid-binding proteins 176 290 IPR012340 -
Cco11g0176 646 NCBIfam replication factor-a protein 1 (rpa1) 4 607 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cco11g0176 646 Gene3D - 430 614 IPR012340 -
Cco11g0176 646 PANTHER REPLICATION FACTOR A 1, RFA1 178 592 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cco11g0176 646 FunFam Replication protein A subunit 4 111 - -
Cco11g0176 646 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cco11g0176 646 CDD RPA1_DBD_B 311 418 - -
Cco11g0176 646 FunFam Replication protein A subunit 176 285 - -
Cco11g0176 646 Gene3D - 289 429 IPR012340 -
Cco11g0176 646 CDD RPA1_DBD_C 446 613 IPR047192 -
Cco11g0176 646 SUPERFAMILY Nucleic acid-binding proteins 294 425 IPR012340 -
Cco11g0176 646 Gene3D - 3 111 IPR012340 -
Cco11g0176 646 CDD RPA1_DBD_A 179 281 - -
Cco11g0176 646 Pfam OB-fold nucleic acid binding domain 192 262 IPR004365 GO:0003676(InterPro)
Cco11g0176 646 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cco11g0176 646 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1757 Cco-Chr6:28059366 Cco11g0176 Cco-Chr11:1770004 5.30E-80 dispersed
Cco10g0112 Cco-Chr10:1013816 Cco11g0176 Cco-Chr11:1770004 4.40E-194 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0176 K07466 - csv:101207583 1155.2