Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0181 ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGTCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGACGAGGGACAGGATGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCATGCAGCAATAAGAGAGCACGGCCCTGA 756 46.96 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGQDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1797278 1799786 + CcPI632755_11g001810.1 Cco11g0181 191417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0181 251 Pfam PHD-finger 198 244 IPR019787 -
Cco11g0181 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cco11g0181 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco11g0181 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cco11g0181 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cco11g0181 251 FunFam PHD finger alfin-like protein 190 246 - -
Cco11g0181 251 SMART PHD_3 197 245 IPR001965 -
Cco11g0181 251 MobiDBLite consensus disorder prediction 145 191 - -
Cco11g0181 251 MobiDBLite consensus disorder prediction 145 164 - -
Cco11g0181 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Cco11g0181 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cco11g0181 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2197 Cco-Chr10:35034041 Cco11g0181 Cco-Chr11:1797278 3.60E-85 dispersed
Cco08g1144 Cco-Chr8:23295016 Cco11g0181 Cco-Chr11:1797278 7.20E-106 transposed
Cco10g0716 Cco-Chr10:10246505 Cco11g0181 Cco-Chr11:1797278 4.30E-99 transposed
Cco11g0181 Cco-Chr11:1797278 Cco03g1580 Cco-Chr3:30424522 3.80E-45 wgd
Cco11g0181 Cco-Chr11:1797278 Cco09g0081 Cco-Chr9:735488 2.70E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60219 PF12165 Alfin 9.00E-70 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0181 K26274 - rcu:8272513 460.685