Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0187 | ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACTGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTACTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGCGTTAGTGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTTGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGCGAACTTCTGGTACATCCTTTCATCAAAAACAACCTTCTAATTTTTATTTGGAACAGGAGTCAGCCACAGGCTCTTCCACTTTGA | 1047 | 41.74 | MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLAQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKNNLLIFIWNRSQPQALPL | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1842301 | 1844875 | + | CcPI632755_11g001870.1 | Cco11g0187 | 191423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0187 | 348 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Cco11g0187 | 348 | SMART | serkin_6 | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0187 | 348 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 337 | - | - | |
Cco11g0187 | 348 | CDD | PKc_MAPKK_plant_like | 68 | 331 | - | - | |
Cco11g0187 | 348 | FunFam | Mitogen-activated protein kinase kinase 1 | 52 | 149 | - | - | |
Cco11g0187 | 348 | SUPERFAMILY | Protein kinase-like (PK-like) | 55 | 341 | IPR011009 | - | |
Cco11g0187 | 348 | ProSiteProfiles | Protein kinase domain profile. | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0187 | 348 | FunFam | mitogen-activated protein kinase kinase 3 | 150 | 334 | - | - | |
Cco11g0187 | 348 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 188 | 200 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0187 | 348 | Gene3D | Phosphorylase Kinase; domain 1 | 49 | 149 | - | - | |
Cco11g0187 | 348 | Pfam | Protein kinase domain | 73 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0187 | 348 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 46 | 331 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g0703 | Cco-Chr9:6352191 | Cco11g0187 | Cco-Chr11:1842301 | 5.90E-31 | dispersed | |
Cco10g1377 | Cco-Chr10:26816257 | Cco11g0187 | Cco-Chr11:1842301 | 3.20E-57 | dispersed | |
Cco11g0187 | Cco-Chr11:1842301 | Cco11g0228 | Cco-Chr11:2210164 | 2.70E-113 | dispersed | |
Cco01g1633 | Cco-Chr1:29063757 | Cco11g0187 | Cco-Chr11:1842301 | 4.80E-64 | transposed | |
Cco11g0187 | Cco-Chr11:1842301 | Cco03g1588 | Cco-Chr3:30499278 | 4.30E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87210 | PF00069 | Pkinase | 8.70E-70 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0187 | K20603 | - | csv:101206374 | 634.795 |