Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0187 ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACTGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGGCACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTACTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCACAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGCGTTAGTGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTTGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGCGAACTTCTGGTACATCCTTTCATCAAAAACAACCTTCTAATTTTTATTTGGAACAGGAGTCAGCCACAGGCTCTTCCACTTTGA 1047 41.74 MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLAQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKNNLLIFIWNRSQPQALPL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1842301 1844875 + CcPI632755_11g001870.1 Cco11g0187 191423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0187 348 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cco11g0187 348 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0187 348 Gene3D Transferase(Phosphotransferase) domain 1 150 337 - -
Cco11g0187 348 CDD PKc_MAPKK_plant_like 68 331 - -
Cco11g0187 348 FunFam Mitogen-activated protein kinase kinase 1 52 149 - -
Cco11g0187 348 SUPERFAMILY Protein kinase-like (PK-like) 55 341 IPR011009 -
Cco11g0187 348 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0187 348 FunFam mitogen-activated protein kinase kinase 3 150 334 - -
Cco11g0187 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0187 348 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Cco11g0187 348 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0187 348 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 331 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0703 Cco-Chr9:6352191 Cco11g0187 Cco-Chr11:1842301 5.90E-31 dispersed
Cco10g1377 Cco-Chr10:26816257 Cco11g0187 Cco-Chr11:1842301 3.20E-57 dispersed
Cco11g0187 Cco-Chr11:1842301 Cco11g0228 Cco-Chr11:2210164 2.70E-113 dispersed
Cco01g1633 Cco-Chr1:29063757 Cco11g0187 Cco-Chr11:1842301 4.80E-64 transposed
Cco11g0187 Cco-Chr11:1842301 Cco03g1588 Cco-Chr3:30499278 4.30E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87210 PF00069 Pkinase 8.70E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0187 K20603 - csv:101206374 634.795