Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0188 ATGACATCCGTGGCGGTTGCCGTTAATAGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCTATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTTGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCGACAAATTTCTTCGACGAAGTTAATGTGATTGGCATGGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACAACTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGACGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTTCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCAATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACTGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTAGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2190 43.29 MTSVAVAVNSVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTAPSSFDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGMGGYGKVYKCSLDHTTVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGNIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1845996 1849431 - CcPI632755_11g001880.1 Cco11g0188 191424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0188 729 Pfam Protein kinase domain 374 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0188 729 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Cco11g0188 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 153 - -
Cco11g0188 729 Coils Coil 259 279 - -
Cco11g0188 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Cco11g0188 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0188 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco11g0188 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Cco11g0188 729 Gene3D HUPs 4 156 IPR014729 -
Cco11g0188 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0188 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Cco11g0188 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco11g0188 729 FunFam Os07g0541700 protein 445 535 - -
Cco11g0188 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0188 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco11g0188 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Cco11g0188 729 Coils Coil 298 344 - -
Cco11g0188 729 PANTHER OS02G0152300 PROTEIN 4 717 IPR051348 -
Cco11g0188 729 MobiDBLite consensus disorder prediction 201 220 - -
Cco11g0188 729 Pfam Universal stress protein family 18 153 IPR006016 -
Cco11g0188 729 CDD STK_N 3 163 - -
Cco11g0188 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cco11g0188 729 SUPERFAMILY RING/U-box 646 723 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0483 Cco-Chr1:4744444 Cco11g0188 Cco-Chr11:1845996 8.10E-127 dispersed
Cco05g0188 Cco-Chr5:1475344 Cco11g0188 Cco-Chr11:1845996 2.50E-91 dispersed
Cco06g0373 Cco-Chr6:4173892 Cco11g0188 Cco-Chr11:1845996 4.20E-69 dispersed
Cco06g1934 Cco-Chr6:29608915 Cco11g0188 Cco-Chr11:1845996 4.70E-08 dispersed
Cco11g0188 Cco-Chr11:1845996 Cco11g1155 Cco-Chr11:22585727 1.10E-100 dispersed
Cco11g0188 Cco-Chr11:1845996 Cco09g0075 Cco-Chr9:649760 2.50E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87211 PF00069 Pkinase 4.20E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0188 - - - 0.0