Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0213 | ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTACGGAGGATTCGATGATGGATGGGTACAGTTATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGACTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGTGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGATGGAGAACTCCGTCGGCTGCGGGGATCAAGACAAATACAGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA | 1176 | 52.04 | MIVGEQPKRPNPTVQVPPWTFTEDSMMDGYSYSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIVSPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRMENSVGCGDQDKYSGGGLDVGWISELLK | 391 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2060806 | 2061981 | - | CcPI632755_11g002130.1 | Cco11g0213 | 191449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0213 | 391 | PANTHER | UNKEMPT FAMILY MEMBER | 55 | 391 | IPR045234 | - | |
Cco11g0213 | 391 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cco11g0213 | 391 | SUPERFAMILY | CCCH zinc finger | 138 | 168 | IPR036855 | GO:0046872(InterPro) | |
Cco11g0213 | 391 | ProSiteProfiles | Zinc finger C3H1-type profile. | 139 | 166 | IPR000571 | GO:0046872(InterPro) | |
Cco11g0213 | 391 | FunFam | Zinc finger CCCH domain-containing protein 66 | 97 | 165 | - | - | |
Cco11g0213 | 391 | SMART | c3hfinal6 | 139 | 165 | IPR000571 | GO:0046872(InterPro) | |
Cco11g0213 | 391 | SMART | c3hfinal6 | 174 | 197 | IPR000571 | GO:0046872(InterPro) | |
Cco11g0213 | 391 | Gene3D | - | 103 | 165 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2009 | Cco-Chr5:29212242 | Cco11g0213 | Cco-Chr11:2060806 | 1.60E-86 | dispersed | |
Cco07g0250 | Cco-Chr7:2552897 | Cco11g0213 | Cco-Chr11:2060806 | 3.80E-57 | dispersed | |
Cco07g1779 | Cco-Chr7:31936566 | Cco11g0213 | Cco-Chr11:2060806 | 6.60E-46 | dispersed | |
Cco08g1862 | Cco-Chr8:29671343 | Cco11g0213 | Cco-Chr11:2060806 | 1.10E-62 | dispersed | |
Cco10g1692 | Cco-Chr10:30465501 | Cco11g0213 | Cco-Chr11:2060806 | 1.80E-50 | dispersed | |
Cco11g0213 | Cco-Chr11:2060806 | Cco03g1644 | Cco-Chr3:31120749 | 3.60E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60222 | None | None | None | None | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0213 | - | - | - | 0.0 |