Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0213 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTACGGAGGATTCGATGATGGATGGGTACAGTTATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCGTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGACTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGTGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGATGGAGAACTCCGTCGGCTGCGGGGATCAAGACAAATACAGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA 1176 52.04 MIVGEQPKRPNPTVQVPPWTFTEDSMMDGYSYSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIVSPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRMENSVGCGDQDKYSGGGLDVGWISELLK 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2060806 2061981 - CcPI632755_11g002130.1 Cco11g0213 191449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0213 391 PANTHER UNKEMPT FAMILY MEMBER 55 391 IPR045234 -
Cco11g0213 391 MobiDBLite consensus disorder prediction 1 22 - -
Cco11g0213 391 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Cco11g0213 391 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Cco11g0213 391 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Cco11g0213 391 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Cco11g0213 391 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Cco11g0213 391 Gene3D - 103 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2009 Cco-Chr5:29212242 Cco11g0213 Cco-Chr11:2060806 1.60E-86 dispersed
Cco07g0250 Cco-Chr7:2552897 Cco11g0213 Cco-Chr11:2060806 3.80E-57 dispersed
Cco07g1779 Cco-Chr7:31936566 Cco11g0213 Cco-Chr11:2060806 6.60E-46 dispersed
Cco08g1862 Cco-Chr8:29671343 Cco11g0213 Cco-Chr11:2060806 1.10E-62 dispersed
Cco10g1692 Cco-Chr10:30465501 Cco11g0213 Cco-Chr11:2060806 1.80E-50 dispersed
Cco11g0213 Cco-Chr11:2060806 Cco03g1644 Cco-Chr3:31120749 3.60E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60222 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0213 - - - 0.0