Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0226 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTCGAGAGGCTGGGCGATTACCTTGTCGATCAGGGTCTGTAG 402 49.75 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2202593 2204093 + CcPI632755_11g002260.1 Cco11g0226 191462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0226 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco11g0226 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 FunFam Profilin 1 133 - -
Cco11g0226 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cco11g0226 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cco11g0226 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Cco11g0226 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0226 K05759 - - csv:101219322 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0025 Cco-Chr9:216838 Cco11g0226 Cco-Chr11:2202593 8.90E-62 dispersed
Cco11g0226 Cco-Chr11:2202593 Cco11g0227 Cco-Chr11:2206025 1.40E-49 tandem
Cco11g1554 Cco-Chr11:28424415 Cco11g0226 Cco-Chr11:2202593 7.40E-55 transposed
Cco11g0226 Cco-Chr11:2202593 Cco07g1416 Cco-Chr7:28277382 1.70E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-213 738.0
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-213 738.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.3e-200 693.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.4e-214 739.6
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 5.8e-215 743.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.3e-213 736.1
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.2e-213 737.3
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 1.2e-53 206.1
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.9e-50 193.4
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 2.4e-51 198.4
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cco11g0227 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 4.1e-54 207.6
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 3.0e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112