Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0226 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTCGAGAGGCTGGGCGATTACCTTGTCGATCAGGGTCTGTAG 402 49.75 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2202593 2204093 + CcPI632755_11g002260.1 Cco11g0226 191462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0226 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco11g0226 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 FunFam Profilin 1 133 - -
Cco11g0226 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cco11g0226 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cco11g0226 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Cco11g0226 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
Cco11g0226 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0025 Cco-Chr9:216838 Cco11g0226 Cco-Chr11:2202593 8.90E-62 dispersed
Cco11g0226 Cco-Chr11:2202593 Cco11g0227 Cco-Chr11:2206025 1.40E-49 tandem
Cco11g1554 Cco-Chr11:28424415 Cco11g0226 Cco-Chr11:2202593 7.40E-55 transposed
Cco11g0226 Cco-Chr11:2202593 Cco07g1416 Cco-Chr7:28277382 1.70E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0226 K05759 - csv:101219322 260.381