Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0227 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGGCCTCTAAATATCGGGAAACCGCTTATTGTTTGTACAAGTCTATGGTCTCTTGAATGGAAATGGGTTTGA 408 46.32 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGPLNIGKPLIVCTSLWSLEWKWV 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2206025 2207528 + CcPI632755_11g002270.1 Cco11g0227 191463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0227 135 SUPERFAMILY Profilin (actin-binding protein) 2 116 IPR036140 -
Cco11g0227 135 PANTHER PROFILIN 1 116 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco11g0227 135 CDD PROF 2 116 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 FunFam Profilin 1 118 - -
Cco11g0227 135 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Cco11g0227 135 Gene3D Dynein light chain 2a, cytoplasmic 2 119 - -
Cco11g0227 135 SMART prof_2 1 126 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0227 K05759 - - cit:102628130 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0227 Cco-Chr11:2206025 Cco11g1554 Cco-Chr11:28424415 1.80E-49 dispersed
Cco11g0226 Cco-Chr11:2202593 Cco11g0227 Cco-Chr11:2206025 1.40E-49 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT2G37620 96.8 7.6e-215 743.0
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.8e-214 740.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.5e-213 738.0
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G59370 97.1 6.5e-214 740.0
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-213 738.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G59370 93.9 8.7e-211 729.6
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.3e-210 727.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.3e-200 693.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.0e-214 742.7
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.4e-214 739.6
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 5.8e-215 743.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.8e-214 740.7
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.3e-213 736.1
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.8e-209 723.8
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 9.0e-208 719.5
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.6e-210 726.1
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.6e-209 725.3
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 6.3e-209 723.4
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT1G49240 92.6 6.3e-209 723.4
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT1G49240 92.3 4.1e-208 720.7
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cco04g1320 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.1e-217 749.6
Cco09g1453 . 117 493 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cco10g1738 . 58 434 Cytoskeleton Gene Families AT5G09810 96.6 6.5e-214 740.0
Cco04g1010 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cco02g2157 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cco07g0325 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.2e-213 737.3
Cco09g2177 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cco02g0067 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.7e-57 216.5
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT2G19760 72.5 1.2e-53 206.1
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT2G19760 76.9 7.9e-50 193.4
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29350 70.2 2.4e-51 198.4
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29350 76.9 1.1e-48 189.5
Cco11g0227 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.7e-38 153.7
Cco11g0226 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cco09g0025 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cco11g1554 . 305 435 Cytoskeleton Gene Families AT4G29340 72.4 4.1e-54 207.6
Cco07g1416 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cco11g0227 . 1 117 Cytoskeleton Gene Families AT4G29340 65.8 3.0e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112