Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0227 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGGCCTCTAAATATCGGGAAACCGCTTATTGTTTGTACAAGTCTATGGTCTCTTGAATGGAAATGGGTTTGA 408 46.32 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGPLNIGKPLIVCTSLWSLEWKWV 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2206025 2207528 + CcPI632755_11g002270.1 Cco11g0227 191463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0227 135 SUPERFAMILY Profilin (actin-binding protein) 2 116 IPR036140 -
Cco11g0227 135 PANTHER PROFILIN 1 116 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco11g0227 135 CDD PROF 2 116 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 FunFam Profilin 1 118 - -
Cco11g0227 135 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Cco11g0227 135 Gene3D Dynein light chain 2a, cytoplasmic 2 119 - -
Cco11g0227 135 SMART prof_2 1 126 IPR005455 GO:0003779(InterPro)
Cco11g0227 135 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0227 Cco-Chr11:2206025 Cco11g1554 Cco-Chr11:28424415 1.80E-49 dispersed
Cco11g0226 Cco-Chr11:2202593 Cco11g0227 Cco-Chr11:2206025 1.40E-49 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0227 K05759 - cit:102628130 217.624