Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0228 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACGTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGACATGGGAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAAGGAACTCAAACTCTATAAACTCAATTGAATCTTCTTCGTCAGAATTGTTAGAAGATGCATCGTCATCTTCTTTAACGTCTAACGTTTCGTCATTGTCGTTATCGCCATCGGTATCATCATCAGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTGTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGCAAAAGGATGAAGTCTTCTAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAAAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 1536 40.69 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPTWETKRRLKLLKLWSLRNSNSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSVASAKSLEDLAKRVNNISQSKRMKSSKSYGGGFDAQKSSYSPKPLIAKKVSKGSSLLSPVSKRNNRLFDSHS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2210164 2218768 + CcPI632755_11g002280.1 Cco11g0228 191464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0228 511 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 MobiDBLite consensus disorder prediction 457 474 - -
Cco11g0228 511 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cco11g0228 511 SUPERFAMILY Protein kinase-like (PK-like) 67 398 IPR011009 -
Cco11g0228 511 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cco11g0228 511 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco11g0228 511 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cco11g0228 511 CDD PKc_MAPKK_plant_like 67 333 - -
Cco11g0228 511 MobiDBLite consensus disorder prediction 457 511 - -
Cco11g0228 511 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
Cco11g0228 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1588 Cco-Chr3:30499278 Cco11g0228 Cco-Chr11:2210164 8.70E-125 dispersed
Cco07g1499 Cco-Chr7:29072400 Cco11g0228 Cco-Chr11:2210164 3.50E-55 dispersed
Cco11g0187 Cco-Chr11:1842301 Cco11g0228 Cco-Chr11:2210164 2.70E-113 dispersed
Cco11g0228 Cco-Chr11:2210164 Cco06g0231 Cco-Chr6:2449595 2.30E-25 dispersed
Cco08g1133 Cco-Chr8:23134319 Cco11g0228 Cco-Chr11:2210164 2.20E-07 transposed
Cco10g1377 Cco-Chr10:26816257 Cco11g0228 Cco-Chr11:2210164 2.90E-66 transposed
Cco11g0228 Cco-Chr11:2210164 Cco03g1662 Cco-Chr3:31255899 1.60E-21 wgd
Cco11g0228 Cco-Chr11:2210164 Cco07g1414 Cco-Chr7:28266805 1.20E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87213 PF00069 Pkinase 4.30E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0228 K04368 - csv:101218848 674.855