Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0228 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACGTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGACATGGGAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAAGGAACTCAAACTCTATAAACTCAATTGAATCTTCTTCGTCAGAATTGTTAGAAGATGCATCGTCATCTTCTTTAACGTCTAACGTTTCGTCATTGTCGTTATCGCCATCGGTATCATCATCAGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTGTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGCAAAAGGATGAAGTCTTCTAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAAAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 1536 40.69 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPTWETKRRLKLLKLWSLRNSNSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSVASAKSLEDLAKRVNNISQSKRMKSSKSYGGGFDAQKSSYSPKPLIAKKVSKGSSLLSPVSKRNNRLFDSHS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2210164 2218768 + CcPI632755_11g002280.1 Cco11g0228 191464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0228 511 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 MobiDBLite consensus disorder prediction 457 474 - -
Cco11g0228 511 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cco11g0228 511 SUPERFAMILY Protein kinase-like (PK-like) 67 398 IPR011009 -
Cco11g0228 511 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cco11g0228 511 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cco11g0228 511 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cco11g0228 511 CDD PKc_MAPKK_plant_like 67 333 - -
Cco11g0228 511 MobiDBLite consensus disorder prediction 457 511 - -
Cco11g0228 511 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
Cco11g0228 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0228 511 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0228 K04368 - - csv:101218848 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1588 Cco-Chr3:30499278 Cco11g0228 Cco-Chr11:2210164 8.70E-125 dispersed
Cco07g1499 Cco-Chr7:29072400 Cco11g0228 Cco-Chr11:2210164 3.50E-55 dispersed
Cco11g0187 Cco-Chr11:1842301 Cco11g0228 Cco-Chr11:2210164 2.70E-113 dispersed
Cco11g0228 Cco-Chr11:2210164 Cco06g0231 Cco-Chr6:2449595 2.30E-25 dispersed
Cco08g1133 Cco-Chr8:23134319 Cco11g0228 Cco-Chr11:2210164 2.20E-07 transposed
Cco10g1377 Cco-Chr10:26816257 Cco11g0228 Cco-Chr11:2210164 2.90E-66 transposed
Cco11g0228 Cco-Chr11:2210164 Cco03g1662 Cco-Chr3:31255899 1.60E-21 wgd
Cco11g0228 Cco-Chr11:2210164 Cco07g1414 Cco-Chr7:28266805 1.20E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g255 . . . . Bpe01g00566 . . Bma11g00544 Cmo10g00705 Cmo11g00669 . . . . Sed08g0828 Cpe04g01087 Cpe18g00393 Bhi02g01946 Tan09g1197 Cmetu02g1395 . Hepe09g0826 . . Cla11g00184 Cam11g0214 Cec11g0215 Cco11g0228 Clacu11g0348 Cmu11g0198 Cre11g0697 . . . . Lsi06g00228 Csa02g00083 . Cme02g00193 Blo08g00323 Blo14g00525 Bda02g00408 Bda09g01123 . . . . Sed01g1248 . . Cma10g00677 Cma11g00657 Car10g00610 Car11g00540 . . Bhi06g01690 Tan08g0110 Cmetu05g0946 . Hepe08g2629 . . Cla03g01541 Cam03g1620 Cec03g1662 Cco03g1662 Clacu03g1644 Cmu03g2197 Cre03g1872 Lsi11g00219 Csa01g02876 Chy02g01171 Cme05g02011
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco03g1588 . 104 409 MAP Kinase Kinase Gene Family AT4G26070 71.6 9.9e-129 456.8
Cco11g0187 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 9.3e-119 423.7
Cco11g0228 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.0 3.3e-108 388.7
Cco03g1588 . 77 402 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.3e-133 472.2
Cco11g0187 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.0e-117 418.7
Cco11g0228 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 1.2e-110 396.7
Cco10g1377 . 61 543 MAP Kinase Kinase Gene Family AT5G40440 79.5 2.1e-228 788.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.3e-134 476.5
Cco07g1499 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.3e-128 456.4
Cco01g1633 . 39 311 MAP Kinase Kinase Gene Family AT3G21220 54.2 1.2e-84 310.5
Cco11g0228 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.3 7.1e-170 593.6
Cco03g1588 . 83 408 MAP Kinase Kinase Gene Family AT5G56580 61.5 7.7e-116 414.1
Cco11g0187 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.2e-104 374.8
Cco01g1633 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.6e-109 392.9
Cco01g1633 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.1 1.3e-81 300.1
Cco01g1633 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.6e-114 409.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87213 PF00069 Pkinase 4.30E-66 CL0016 Cco PK