Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0228 | ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACGTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGACATGGGAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAAGGAACTCAAACTCTATAAACTCAATTGAATCTTCTTCGTCAGAATTGTTAGAAGATGCATCGTCATCTTCTTTAACGTCTAACGTTTCGTCATTGTCGTTATCGCCATCGGTATCATCATCAGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTGTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGCAAAAGGATGAAGTCTTCTAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAAAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA | 1536 | 40.69 | MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPTWETKRRLKLLKLWSLRNSNSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSVASAKSLEDLAKRVNNISQSKRMKSSKSYGGGFDAQKSSYSPKPLIAKKVSKGSSLLSPVSKRNNRLFDSHS | 511 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2210164 | 2218768 | + | CcPI632755_11g002280.1 | Cco11g0228 | 191464 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0228 | 511 | Pfam | Protein kinase domain | 70 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0228 | 511 | ProSiteProfiles | Protein kinase domain profile. | 69 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0228 | 511 | MobiDBLite | consensus disorder prediction | 457 | 474 | - | - | |
Cco11g0228 | 511 | FunFam | Mitogen-activated protein kinase kinase 6 | 150 | 348 | - | - | |
Cco11g0228 | 511 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 398 | IPR011009 | - | |
Cco11g0228 | 511 | FunFam | Mitogen-activated protein kinase kinase 6 | 39 | 148 | - | - | |
Cco11g0228 | 511 | SMART | serkin_6 | 69 | 329 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0228 | 511 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 45 | 351 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cco11g0228 | 511 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524(InterPro) | |
Cco11g0228 | 511 | CDD | PKc_MAPKK_plant_like | 67 | 333 | - | - | |
Cco11g0228 | 511 | MobiDBLite | consensus disorder prediction | 457 | 511 | - | - | |
Cco11g0228 | 511 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 345 | - | - | |
Cco11g0228 | 511 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0228 | 511 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1588 | Cco-Chr3:30499278 | Cco11g0228 | Cco-Chr11:2210164 | 8.70E-125 | dispersed | |
Cco07g1499 | Cco-Chr7:29072400 | Cco11g0228 | Cco-Chr11:2210164 | 3.50E-55 | dispersed | |
Cco11g0187 | Cco-Chr11:1842301 | Cco11g0228 | Cco-Chr11:2210164 | 2.70E-113 | dispersed | |
Cco11g0228 | Cco-Chr11:2210164 | Cco06g0231 | Cco-Chr6:2449595 | 2.30E-25 | dispersed | |
Cco08g1133 | Cco-Chr8:23134319 | Cco11g0228 | Cco-Chr11:2210164 | 2.20E-07 | transposed | |
Cco10g1377 | Cco-Chr10:26816257 | Cco11g0228 | Cco-Chr11:2210164 | 2.90E-66 | transposed | |
Cco11g0228 | Cco-Chr11:2210164 | Cco03g1662 | Cco-Chr3:31255899 | 1.60E-21 | wgd | |
Cco11g0228 | Cco-Chr11:2210164 | Cco07g1414 | Cco-Chr7:28266805 | 1.20E-18 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87213 | PF00069 | Pkinase | 4.30E-66 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0228 | K04368 | - | csv:101218848 | 674.855 |