Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0247 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCGCCAATTCCTGGTCCTCATCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGGAGTCGAGAGAGTAGCAACAATAGTCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCTCCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGCGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGCGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCAGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 762 55.64 MADATVPETDSGGSANSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYAESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2394036 2394797 - CcPI632755_11g002470.1 Cco11g0247 191483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0247 253 Pfam AP2 domain 55 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 SMART rav1_2 56 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 Coils Coil 218 238 - -
Cco11g0247 253 MobiDBLite consensus disorder prediction 142 176 - -
Cco11g0247 253 MobiDBLite consensus disorder prediction 9 45 - -
Cco11g0247 253 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 CDD AP2 55 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0247 253 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677(InterPro)
Cco11g0247 253 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Cco11g0247 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 201 IPR051032 -
Cco11g0247 253 MobiDBLite consensus disorder prediction 144 161 - -
Cco11g0247 253 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0160 Cco-Chr8:2582201 Cco11g0247 Cco-Chr11:2394036 8.50E-27 dispersed
Cco08g1380 Cco-Chr8:25730078 Cco11g0247 Cco-Chr11:2394036 6.80E-38 dispersed
Cco09g0176 Cco-Chr9:1626472 Cco11g0247 Cco-Chr11:2394036 3.20E-34 dispersed
Cco10g0252 Cco-Chr10:2726744 Cco11g0247 Cco-Chr11:2394036 1.30E-36 dispersed
Cco11g0247 Cco-Chr11:2394036 Cco11g1567 Cco-Chr11:28561775 3.10E-39 dispersed
Cco11g0247 Cco-Chr11:2394036 Cco06g1024 Cco-Chr6:14163526 2.70E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60224 PF00847 AP2 7.40E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0247 K09286 - csv:101212945 338.961