Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0257 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCAAACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGGTCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCTGGGCGGGGACTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTTTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCGTGTGTCGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTATGGTTTGGAGATCGACTTATGGTCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTCCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACAGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTTCATGTTCCTATGACAAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAATCGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA 1449 46.03 MEPSSAKSWSIQTRPDIIQKYEILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPAFQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNSSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPMTKTGQDEDSPAGWYDYNESDSDMDEFGPMNVTTTATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2512120 2514080 + CcPI632755_11g002570.1 Cco11g0257 191493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0257 482 PANTHER CELL DIVISION PROTEIN KINASE 20 423 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Cco11g0257 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0257 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0257 482 Pfam Protein kinase domain 21 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0257 482 SUPERFAMILY Protein kinase-like (PK-like) 8 441 IPR011009 -
Cco11g0257 482 FunFam Cyclin-dependent kinase F-1 12 106 - -
Cco11g0257 482 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Cco11g0257 482 SMART serkin_6 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0257 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Cco11g0257 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0257 482 MobiDBLite consensus disorder prediction 204 223 - -
Cco11g0257 482 Gene3D Transferase(Phosphotransferase) domain 1 270 433 - -
Cco11g0257 482 Gene3D Transferase(Phosphotransferase) domain 1 114 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0257 Cco-Chr11:2512120 Cco11g0469 Cco-Chr11:4996384 7.60E-34 dispersed
Cco11g0257 Cco-Chr11:2512120 Cco11g1440 Cco-Chr11:27176003 6.90E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87215 PF00069 Pkinase 7.40E-32 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0257 - - - 0.0