Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0258 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGTGCCTCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCGCAGAATCTTCCGCAAGCTCAGCCAAAGCCACAGACGCAGACGCAGATGGTGGCGGCGGCGATCGCACCTTTGGCTCCTCATTCGTCAGTAAGAGCTGTGAAACCGGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGCAACTGTAAACACTCACGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATATTGTGATGGTTGCAACTGTATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCCAAAATTGCCAGCAGCCCTCATGGAATGCGGGACAGCAGGGAGGAGGCAGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGGTGCCACTGCAAGAAATCGGGTTGTCTGAAAAAGTATTGCGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAGGACATATCCACCCATAGACCAGTGGCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTAGGTAGCCCGTCAGTGTTGGGTCCTTCAAAGTTCACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCAAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCTGATGGCCAGACTGAAACTTCTGTTGCATCATCCTCTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCTAGTGCAAACCAGGCTGATAAAACCACCCCCGATGATTCCAATTCAGATGGTGGAGATGTGCCCAAGGGCGCACCCATGTCTCCCGGAACCTTAGCTTTGATGTGTGATGAGCAAGATACAATGCTAATGACTGCTGCTTCCCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCAATTACACCGTCAGTGAAGACATCGCAGACGGTGACAACCCCAGCAGTTATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1779 45.92 MGEEDSVGASQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQTQTQMVAAAIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPVAFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSSQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMTAASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLNNKVTKSSITPSVKTSQTVTTPAVMTLSNDQRQKVLPLS 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2517274 2521291 + CcPI632755_11g002580.1 Cco11g0258 191494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0258 592 SMART CXC_2 119 159 IPR033467 -
Cco11g0258 592 SMART CXC_2 204 245 IPR033467 -
Cco11g0258 592 MobiDBLite consensus disorder prediction 94 118 - -
Cco11g0258 592 MobiDBLite consensus disorder prediction 1 79 - -
Cco11g0258 592 MobiDBLite consensus disorder prediction 403 419 - -
Cco11g0258 592 PANTHER TESMIN/TSO1-RELATED 31 520 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco11g0258 592 MobiDBLite consensus disorder prediction 375 402 - -
Cco11g0258 592 MobiDBLite consensus disorder prediction 375 450 - -
Cco11g0258 592 MobiDBLite consensus disorder prediction 420 434 - -
Cco11g0258 592 MobiDBLite consensus disorder prediction 44 79 - -
Cco11g0258 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 207 241 IPR005172 -
Cco11g0258 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 121 156 IPR005172 -
Cco11g0258 592 ProSiteProfiles CRC domain profile. 120 244 IPR005172 -
Cco11g0258 592 MobiDBLite consensus disorder prediction 9 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0258 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0644 Cco-Chr6:7116870 Cco11g0258 Cco-Chr11:2517274 1.50E-31 dispersed
Cco07g1360 Cco-Chr7:27653569 Cco11g0258 Cco-Chr11:2517274 3.20E-12 dispersed
Cco08g1476 Cco-Chr8:26619917 Cco11g0258 Cco-Chr11:2517274 2.20E-25 dispersed
Cco11g0258 Cco-Chr11:2517274 Cco06g0973 Cco-Chr6:13123099 2.20E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1476 . 294 419 CPP Transcription Factor Family AT3G22780 57.1 1.9e-38 157.9
Cco08g1476 . 266 419 CPP Transcription Factor Family AT4G14770 51.3 4.3e-40 163.3
Cco11g0258 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.6e-142 501.5
Cco06g0973 . 124 606 CPP Transcription Factor Family AT2G20110 52.7 9.5e-126 447.6
Cco11g0258 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cco06g0973 . 114 637 CPP Transcription Factor Family AT4G29000 53.3 1.3e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60225 PF03638 TCR 3.10E-12 No_clan Cco TF