Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0264 ATGTCAACCCCTACTCCAGCGCCGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCGCCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGTCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACTCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGTCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCCTCCTCCTCTTCTAATATTTCAACTGGACTTGTCGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGCTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACATATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCCGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCTGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACGAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTCACTTCTGATTTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTCGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGGCCGCTAATGAACCGGGCTTTAGAAGATGGAAACTTTGATGCTTTGGTCGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCCGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTTGAAGGAGACACATCACTATCGGATCTCAACGAGGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACCCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGGCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA 1995 51.53 MSTPTPAPTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRSPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSRTPSTPSRSPPPPSTSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNAPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDFNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2575393 2578645 - CcPI632755_11g002640.1 Cco11g0264 191500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0264 664 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0264 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0264 664 MobiDBLite consensus disorder prediction 1 134 - -
Cco11g0264 664 Pfam Protein tyrosine and serine/threonine kinase 299 567 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0264 664 MobiDBLite consensus disorder prediction 573 598 - -
Cco11g0264 664 SMART serkin_6 294 530 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0264 664 Gene3D Transferase(Phosphotransferase) domain 1 370 580 - -
Cco11g0264 664 MobiDBLite consensus disorder prediction 1 146 - -
Cco11g0264 664 MobiDBLite consensus disorder prediction 577 596 - -
Cco11g0264 664 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 117 611 IPR047117 -
Cco11g0264 664 Gene3D Phosphorylase Kinase; domain 1 273 369 - -
Cco11g0264 664 PRINTS Pistil-specific extensin-like signature 39 62 IPR003882 -
Cco11g0264 664 PRINTS Pistil-specific extensin-like signature 73 91 IPR003882 -
Cco11g0264 664 FunFam Proline-rich receptor-like protein kinase PERK1 370 578 - -
Cco11g0264 664 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524(InterPro)
Cco11g0264 664 MobiDBLite consensus disorder prediction 618 646 - -
Cco11g0264 664 MobiDBLite consensus disorder prediction 617 664 - -
Cco11g0264 664 MobiDBLite consensus disorder prediction 178 268 - -
Cco11g0264 664 FunFam proline-rich receptor-like protein kinase PERK1 272 369 - -
Cco11g0264 664 MobiDBLite consensus disorder prediction 213 243 - -
Cco11g0264 664 SUPERFAMILY Protein kinase-like (PK-like) 269 567 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1324 Cco-Chr7:27316064 Cco11g0264 Cco-Chr11:2575393 1.70E-78 dispersed
Cco07g1440 Cco-Chr7:28506796 Cco11g0264 Cco-Chr11:2575393 1.90E-87 dispersed
Cco10g0883 Cco-Chr10:18529458 Cco11g0264 Cco-Chr11:2575393 8.30E-74 dispersed
Cco11g0264 Cco-Chr11:2575393 Cco11g0459 Cco-Chr11:4829412 1.00E-161 dispersed
Cco11g1783 Cco-Chr11:30552622 Cco11g0264 Cco-Chr11:2575393 7.60E-71 dispersed
Cco11g1784 Cco-Chr11:30564885 Cco11g0264 Cco-Chr11:2575393 3.90E-72 dispersed
Cco01g0828 Cco-Chr1:8725321 Cco11g0264 Cco-Chr11:2575393 6.50E-52 transposed
Cco03g0875 Cco-Chr3:10518204 Cco11g0264 Cco-Chr11:2575393 4.20E-54 transposed
Cco10g1204 Cco-Chr10:24699315 Cco11g0264 Cco-Chr11:2575393 2.20E-51 transposed
Cco11g0264 Cco-Chr11:2575393 Cco06g0955 Cco-Chr6:12836502 7.40E-197 wgd
Cco11g0264 Cco-Chr11:2575393 Cco09g0226 Cco-Chr9:2016225 8.30E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87216 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0264 - - - 0.0