Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0272 ATGAAGAGCGATACCCATTTCAACATTCATCTTTTCTTACATTTTTTCCTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGTTTCTGAAGAGTTTCTTCAAGTTTCCAGCCATGGCGGCCGAGGCCTTACTGACGCTGAAGCTCATTACATCCGTCAACGTCAACTCCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAGCTTGTTTTTGAAAATGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTCAAATCTCACTCGGAATTGGGTTGGATCTGATGTTTGTCACTACACAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCATCGATCCGTACAGTTGCCGGAATTGACCTCAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTCCATATAAACTCTAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACCTGAAGAGGTTGTTCGAGTTGGATCTGAGTAACAATCGCTTCGCCGGAAAATTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTTGAAGGGACTGTACCTAAGGAGCTTTTCGATAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTCGAGTTACCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCTGGAAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAATTTTTTGGGAGTTTGCCGGAGACAATAGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAGGCGCCGGCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGGAACTGTATACCGAAGCGGCCGGTGCAACGTTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTCGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTCCCATCGCCATCGCCACCTGTTTTCTCTCCTCCGCCACCTGAATCCGCTTCACATCCCATTTACCGGCCACTCCCTCCGCCACCGCCATCCCCATCTCCTCCTCCCCCACCTGTTTACTCTCCTCCGCCTCCACCATCCCCACCACCCCCGTCTCCACCACCCCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCCCCGTCTCCTCCTCCGCCTTCTCCACCACCACCTTCCCCACCCCCACCATCACCCCCACCGCCGCCCCCACCGGTTTACTCTCCACCTCCACCTCCACCATCACCACCCCCACCATCTCCACCGCCACCACCTCCACCGGTTTACTCTCCGCCACCACCTCCACCATCTCCTCCTCCGCCGTCTCCTCCCCCACCATCGCCACCACCACCGGCGCCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCCCCGCCCAACTCTCCACCACCTCCGCCATTGTACTCTCCTCCACCACCGCCCAACTCGCCGCCTCCTCCGCCACATTCACCTCCACCACCAATCTATCCTTACTTATCTCCCCCACCTCCTCCAGCTGTCTATTCTCCCCCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCACCGCCACCGTGTATAGAGTATCATGAACCCCCACCCCCACCATCACCCTCACCACCTCCGCTCATCCAATACCATCCTCCGCCGTCTCCTTCACCCCCACCCCCACCTGCACCGACCCCAGTTTACCATTCACCTCCTCCGCCGGTTTATCACTCTCCACCACCACCACCATCACCGTCGCCTCCTCCGCCACCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2292 53.4 MKSDTHFNIHLFLHFFLFFGTFLLCLSSSSSVSEEFLQVSSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPSNLTRNWVGSDVCHYTGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPACLALPDFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPSPPVFSPPPPESASHPIYRPLPPPPPSPSPPPPPVYSPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPAVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPLIQYHPPPSPSPPPPPAPTPVYHSPPPPVYHSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPFY 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2702366 2704657 + CcPI632755_11g002720.1 Cco11g0272 191508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0272 763 SUPERFAMILY L domain-like 91 369 - -
Cco11g0272 763 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 25 605 IPR051582 -
Cco11g0272 763 MobiDBLite consensus disorder prediction 603 630 - -
Cco11g0272 763 FunFam Leucine-rich repeat extensin-like protein 5 253 392 - -
Cco11g0272 763 Pfam Leucine rich repeat N-terminal domain 93 125 IPR013210 -
Cco11g0272 763 Pfam Leucine Rich Repeat 302 324 IPR001611 GO:0005515(InterPro)
Cco11g0272 763 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515(InterPro)
Cco11g0272 763 Gene3D Ribonuclease Inhibitor 252 393 IPR032675 -
Cco11g0272 763 MobiDBLite consensus disorder prediction 672 742 - -
Cco11g0272 763 Pfam Leucine rich repeat 163 218 IPR001611 GO:0005515(InterPro)
Cco11g0272 763 FunFam Leucine-rich repeat extensin-like protein 1 91 252 - -
Cco11g0272 763 Gene3D Ribonuclease Inhibitor 91 251 IPR032675 -
Cco11g0272 763 PRINTS Proline rich extensin signature 409 425 - -
Cco11g0272 763 PRINTS Proline rich extensin signature 443 464 - -
Cco11g0272 763 PRINTS Proline rich extensin signature 469 485 - -
Cco11g0272 763 PRINTS Proline rich extensin signature 431 443 - -
Cco11g0272 763 MobiDBLite consensus disorder prediction 429 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0244 Cco-Chr7:2512977 Cco11g0272 Cco-Chr11:2702366 2.80E-29 dispersed
Cco11g0272 Cco-Chr11:2702366 Cco06g1179 Cco-Chr6:21068478 6.50E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0272 - - - 0.0