Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0272 | ATGAAGAGCGATACCCATTTCAACATTCATCTTTTCTTACATTTTTTCCTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTGTTTCTGAAGAGTTTCTTCAAGTTTCCAGCCATGGCGGCCGAGGCCTTACTGACGCTGAAGCTCATTACATCCGTCAACGTCAACTCCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAGCTTGTTTTTGAAAATGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTCAAATCTCACTCGGAATTGGGTTGGATCTGATGTTTGTCACTACACAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCATCGATCCGTACAGTTGCCGGAATTGACCTCAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTCCATATAAACTCTAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACCTGAAGAGGTTGTTCGAGTTGGATCTGAGTAACAATCGCTTCGCCGGAAAATTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTTGAAGGGACTGTACCTAAGGAGCTTTTCGATAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTCGAGTTACCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCTGGAAGCATTGGGAATATGACGAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAATTTTTTGGGAGTTTGCCGGAGACAATAGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGGAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAGGCGCCGGCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGGAACTGTATACCGAAGCGGCCGGTGCAACGTTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTCGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTCCCATCGCCATCGCCACCTGTTTTCTCTCCTCCGCCACCTGAATCCGCTTCACATCCCATTTACCGGCCACTCCCTCCGCCACCGCCATCCCCATCTCCTCCTCCCCCACCTGTTTACTCTCCTCCGCCTCCACCATCCCCACCACCCCCGTCTCCACCACCCCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCCCCGTCTCCTCCTCCGCCTTCTCCACCACCACCTTCCCCACCCCCACCATCACCCCCACCGCCGCCCCCACCGGTTTACTCTCCACCTCCACCTCCACCATCACCACCCCCACCATCTCCACCGCCACCACCTCCACCGGTTTACTCTCCGCCACCACCTCCACCATCTCCTCCTCCGCCGTCTCCTCCCCCACCATCGCCACCACCACCGGCGCCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCAAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCCCCGCCCAACTCTCCACCACCTCCGCCATTGTACTCTCCTCCACCACCGCCCAACTCGCCGCCTCCTCCGCCACATTCACCTCCACCACCAATCTATCCTTACTTATCTCCCCCACCTCCTCCAGCTGTCTATTCTCCCCCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCACCGCCACCGTGTATAGAGTATCATGAACCCCCACCCCCACCATCACCCTCACCACCTCCGCTCATCCAATACCATCCTCCGCCGTCTCCTTCACCCCCACCCCCACCTGCACCGACCCCAGTTTACCATTCACCTCCTCCGCCGGTTTATCACTCTCCACCACCACCACCATCACCGTCGCCTCCTCCGCCACCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA | 2292 | 53.4 | MKSDTHFNIHLFLHFFLFFGTFLLCLSSSSSVSEEFLQVSSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPSNLTRNWVGSDVCHYTGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPACLALPDFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPSPPVFSPPPPESASHPIYRPLPPPPPSPSPPPPPVYSPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPAVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPLIQYHPPPSPSPPPPPAPTPVYHSPPPPVYHSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPFY | 763 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2702366 | 2704657 | + | CcPI632755_11g002720.1 | Cco11g0272 | 191508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0272 | 763 | SUPERFAMILY | L domain-like | 91 | 369 | - | - | |
Cco11g0272 | 763 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 25 | 605 | IPR051582 | - | |
Cco11g0272 | 763 | MobiDBLite | consensus disorder prediction | 603 | 630 | - | - | |
Cco11g0272 | 763 | FunFam | Leucine-rich repeat extensin-like protein 5 | 253 | 392 | - | - | |
Cco11g0272 | 763 | Pfam | Leucine rich repeat N-terminal domain | 93 | 125 | IPR013210 | - | |
Cco11g0272 | 763 | Pfam | Leucine Rich Repeat | 302 | 324 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0272 | 763 | Pfam | Leucine Rich Repeat | 326 | 348 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0272 | 763 | Gene3D | Ribonuclease Inhibitor | 252 | 393 | IPR032675 | - | |
Cco11g0272 | 763 | MobiDBLite | consensus disorder prediction | 672 | 742 | - | - | |
Cco11g0272 | 763 | Pfam | Leucine rich repeat | 163 | 218 | IPR001611 | GO:0005515(InterPro) | |
Cco11g0272 | 763 | FunFam | Leucine-rich repeat extensin-like protein 1 | 91 | 252 | - | - | |
Cco11g0272 | 763 | Gene3D | Ribonuclease Inhibitor | 91 | 251 | IPR032675 | - | |
Cco11g0272 | 763 | PRINTS | Proline rich extensin signature | 409 | 425 | - | - | |
Cco11g0272 | 763 | PRINTS | Proline rich extensin signature | 443 | 464 | - | - | |
Cco11g0272 | 763 | PRINTS | Proline rich extensin signature | 469 | 485 | - | - | |
Cco11g0272 | 763 | PRINTS | Proline rich extensin signature | 431 | 443 | - | - | |
Cco11g0272 | 763 | MobiDBLite | consensus disorder prediction | 429 | 585 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0244 | Cco-Chr7:2512977 | Cco11g0272 | Cco-Chr11:2702366 | 2.80E-29 | dispersed | |
Cco11g0272 | Cco-Chr11:2702366 | Cco06g1179 | Cco-Chr6:21068478 | 6.50E-72 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0272 | - | - | - | 0.0 |