Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0287 ATGGCTGCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCGGTGGGTCGACTCGGAGCCGACTCAGGATCGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATACTTCTAATTCTGTCTGTAATTGGGTTGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTTCGTTTGCCTGGTGTTGGCCTTGTCGGACCGATTCCGGCCAATACAATCGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCATCGGATTTTTCCAATTTAGTAATGCTGCGGAATCTGTATCTGCAGGATAATGCTTTCTCCGGCGAGTTTCCGTCGAGTTTGACTCGGTTGACTCGGCTTACTCGGCTCGATTTGTCGTCGAACGAATTCTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACTCACTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAGTATCTCAGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGTTCGATTCCGAAATCGTTGGCTAAATTCCCCACCTCCTCCTTCGCCGGGAACTTAGATCTCTGCGGCGGACCATTCCCACCCTGCAACCCATTCACTCCCTCTCCATCTCCGTCACAAAACCCTTCACCAGCCCACAAAAAATCGAAGAAACTCTCCACAGCGGCGATAATCGGAATCATAATCGGCGCCGTTTTCGCAGCTTTTCTTCTCCTCCTCTTCCTCATCCTCTGCATTCGGCGGCGGTCCCGCGGACAACAGACGAAGTCAGCGAAGCCACCATCGGCGGTGGGAACGGCTGCTCGATCAATTCCAGTAGCAGAGGCCGGAACGTCGTCGTCGAAAGACGACATTACCGGAGGATCAGTGGAGGCGACGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAACTTCGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTACTAGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAAGAATTCGAAACTCAAATGGAAATTTTAGGGAAAATTAAACATGAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAAAAACTGCTTGTTTATGATTACATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCCGGCAGGACGCCGTTGGACTGGGATTCAAGAATGAGAATAGCTCTAAGCGCCGGCAGGGGATTAGCGCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGCCCGGATCACGACGCCTGCATCTCCGATTTCGGCCTAAACCCACTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACCGGGCGCCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGCGTTCTCCTCCTTGAGCTCCTGACCGGGAAAGCCCCCAACCAGCAATCCCTCGGCGAGGACGGAATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATTGAAGAAGAGATGGTTCAATTACTGCAGATCGCAATGTCCTGCGTTTCGACGGTTCCCGATCAGCGGCCGGCCATGCCGGAAGTTGTACGTATGATCGAAGATATGAACAGTCATAGAAGTGAGACTGATGACGGGTTGCGCCAGTCTTCCGATGACCCTTCGAAAGGATCGGATGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGAGAGTGACGCCGTAG 1959 52.88 MAAAISLCSVFLLLLLTRWVDSEPTQDRQALLDFFSKTPHANRVQWNTSNSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFSGEFPSSLTRLTRLTRLDLSSNEFSGPIPPSVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPKSLAKFPTSSFAGNLDLCGGPFPPCNPFTPSPSPSQNPSPAHKKSKKLSTAAIIGIIIGAVFAAFLLLLFLILCIRRRSRGQQTKSAKPPSAVGTAARSIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2900088 2904886 + CcPI632755_11g002870.1 Cco11g0287 191523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0287 652 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Cco11g0287 652 Pfam Protein kinase domain 349 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0287 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cco11g0287 652 MobiDBLite consensus disorder prediction 303 317 - -
Cco11g0287 652 MobiDBLite consensus disorder prediction 613 652 - -
Cco11g0287 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Cco11g0287 652 FunFam pollen receptor-like kinase 1 315 419 - -
Cco11g0287 652 MobiDBLite consensus disorder prediction 284 318 - -
Cco11g0287 652 PANTHER OS05G0588300 PROTEIN 7 618 IPR050994 -
Cco11g0287 652 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Cco11g0287 652 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cco11g0287 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Cco11g0287 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cco11g0287 652 MobiDBLite consensus disorder prediction 630 644 - -
Cco11g0287 652 SUPERFAMILY L domain-like 25 207 - -
Cco11g0287 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Cco11g0287 652 CDD STKc_IRAK 351 613 - -
Cco11g0287 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 624 - -
Cco11g0287 652 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cco11g0287 652 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Cco11g0287 652 MobiDBLite consensus disorder prediction 613 629 - -
Cco11g0287 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0287 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0209 Cco-Chr1:1983287 Cco11g0287 Cco-Chr11:2900088 4.30E-135 dispersed
Cco01g1639 Cco-Chr1:29132530 Cco11g0287 Cco-Chr11:2900088 1.30E-129 dispersed
Cco04g0803 Cco-Chr4:23360717 Cco11g0287 Cco-Chr11:2900088 1.10E-136 dispersed
Cco05g1027 Cco-Chr5:9037388 Cco11g0287 Cco-Chr11:2900088 8.80E-121 dispersed
Cco05g1306 Cco-Chr5:13329979 Cco11g0287 Cco-Chr11:2900088 4.30E-125 dispersed
Cco07g0495 Cco-Chr7:6084952 Cco11g0287 Cco-Chr11:2900088 5.20E-70 dispersed
Cco07g0770 Cco-Chr7:16370208 Cco11g0287 Cco-Chr11:2900088 6.20E-79 dispersed
Cco09g0907 Cco-Chr9:8522635 Cco11g0287 Cco-Chr11:2900088 2.10E-59 dispersed
Cco10g0886 Cco-Chr10:18552950 Cco11g0287 Cco-Chr11:2900088 4.10E-72 dispersed
Cco10g1936 Cco-Chr10:32933408 Cco11g0287 Cco-Chr11:2900088 9.40E-94 dispersed
Cco10g2228 Cco-Chr10:35269785 Cco11g0287 Cco-Chr11:2900088 2.40E-75 dispersed
Cco11g0157 Cco-Chr11:1661938 Cco11g0287 Cco-Chr11:2900088 8.40E-68 dispersed
Cco11g0287 Cco-Chr11:2900088 Cco11g0759 Cco-Chr11:8496364 2.50E-48 dispersed
Cco05g1516 Cco-Chr5:18706923 Cco11g0287 Cco-Chr11:2900088 3.30E-16 transposed
Cco09g2089 Cco-Chr9:35292574 Cco11g0287 Cco-Chr11:2900088 1.80E-64 transposed
Cco11g0287 Cco-Chr11:2900088 Cco06g1212 Cco-Chr6:21728731 4.10E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87217 PF00069 Pkinase 5.90E-37 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0287 - - - 0.0