Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0302 ATGGTGGGTTGGATTTTTTGTTGGTTTTTGTTAGTGGTGGTTCTAAGGGCGGCGATGGTTCTGTGGTGGCGGCCGAGAAGAATCGAAGAGCATTTTTTCCGGCAAGGAATTCGTGGCCCTCCTTATCGTTTCTTCATCGGAAATGTTAAGGAACTTGTCGGAATGATGATTAAAGCTTCTTCTGATCTTTCTTTTCCTAATTCTTCTCATAATATTCTCCCTCGTGTTCTTCCTTTTTATCATCACTGGAAGAAAATTTATGGGTCAAAATTTCTAGTGTGGTTTGGGCCAACGGTGAGATTGGCAGTGTCTGATCCAGACTTGATTCGAGAAATCTTCACATCAAAATCAGAATTCTGTGAGAAAAATGAACCTCACCCACTTGTTAAACAGCTAGAAGGTGATGGTCTTCTAAGTCTCAAAGGCCAAAAATGGGCTCTTCATCGCAAGATTATCTCTCCTTCTTTCCACATGGACAATCTCAGATTGTTGATTCCAGTGATGGCAAAAAGTGTCGTGGACATGTTGGAGAAATGGTCAGCATTAATGACGTCAGCAGATTCCGGTGAGATGGAAATTGAAGTTTCCGAATGGTTCCAAACCCTAACTGAAGATGTCATCACTAGGACAGCATTTGGCTCTAGCTATGAAGATGGAAAAGCCATTTTTCGCTTACAAGCCCAACAAATGGTCCTTGCTTCTCAAGCCTTTGAAAAAGTTTTCATCCCTGGCTATAGATTCCTACCTACGAGAACAAATGTGAATTCGTGGAGACTGGATAGAGAAATAAGGAAATCGTTGATGAAATTGATCGACCGACGACGGGAGAATTCCATCGAGACGAGCTCTAAGGATTTACTAGGGTTAATGATTAGGGCATCAAAGTCTTCTCCATCATCTACAATCACTGTTAATGACATTGTTGAAGAGTGCAAAGGGTTTTTCTTTGCTGGCAAACAGACCACATCCAATTTGCTGACGTGGACAATGATCCTCATGGCAATGCACCCACAATGGCAGGTACAGGCACGTGATGAAGTACTAAGGATGTGTGGAGCACGTGACATACCCTCCAAAGATGATGTTACAAAGCTCAAAATGTTGAGTATGATCATCAATGAATCGTTACGGTTATATCCGCCGACCGTCGCAACTATTCGACAAGCGAAAGTTGACGTGGAGCTTGGTGGTTACATGATTCCACGTGGCACTGAGCTATTGATTCCGATTTTAGCTGTTCACCATGATCAAACGATATGGGGTAATGATGTGAATGAGTTCAATCCAGGGCGATTTGTTGAAGGTGTTGCAAAGGCAGCCAATCATCGAGTTGGGTTCATTCCGTTCGGGTTAGGAGCTCGAACTTGCATCGGCCAAAACTTGGCTATATTGCAAGCAAAATTGGCTCTTGCACTCATACTTCAAAGATTCTCTTTTCGACTGGGACCCTCTTATAAACATTCACCAGCGGTTCAAATGCTACTTTATCCACAACATGGTGCACCTATTATTTTCCAAAAATTATCCACTCCATTGATCCATCAAGATCAACATTCATGA 1560 42.5 MVGWIFCWFLLVVVLRAAMVLWWRPRRIEEHFFRQGIRGPPYRFFIGNVKELVGMMIKASSDLSFPNSSHNILPRVLPFYHHWKKIYGSKFLVWFGPTVRLAVSDPDLIREIFTSKSEFCEKNEPHPLVKQLEGDGLLSLKGQKWALHRKIISPSFHMDNLRLLIPVMAKSVVDMLEKWSALMTSADSGEMEIEVSEWFQTLTEDVITRTAFGSSYEDGKAIFRLQAQQMVLASQAFEKVFIPGYRFLPTRTNVNSWRLDREIRKSLMKLIDRRRENSIETSSKDLLGLMIRASKSSPSSTITVNDIVEECKGFFFAGKQTTSNLLTWTMILMAMHPQWQVQARDEVLRMCGARDIPSKDDVTKLKMLSMIINESLRLYPPTVATIRQAKVDVELGGYMIPRGTELLIPILAVHHDQTIWGNDVNEFNPGRFVEGVAKAANHRVGFIPFGLGARTCIGQNLAILQAKLALALILQRFSFRLGPSYKHSPAVQMLLYPQHGAPIIFQKLSTPLIHQDQHS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3027149 3030178 + CcPI632755_11g003020.1 Cco11g0302 191538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0302 519 Gene3D Cytochrome P450 22 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 SUPERFAMILY Cytochrome P450 71 506 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 CDD CYP734 77 502 - -
Cco11g0302 519 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco11g0302 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 9 500 IPR050665 GO:0004497(PANTHER)|GO:0010268(PANTHER)|GO:0016131(PANTHER)
Cco11g0302 519 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS E-class P450 group I signature 84 103 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco11g0302 519 FunFam Cytochrome P450 734A1 22 509 - -
Cco11g0302 519 Pfam Cytochrome P450 80 484 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0302 Cco-Chr11:3027149 Cco11g1763 Cco-Chr11:30369079 3.00E-105 dispersed
Cco03g1688 Cco-Chr3:31601885 Cco11g0302 Cco-Chr11:3027149 1.00E-49 transposed
Cco04g1162 Cco-Chr4:27041090 Cco11g0302 Cco-Chr11:3027149 1.10E-34 transposed
Cco05g2035 Cco-Chr5:29433695 Cco11g0302 Cco-Chr11:3027149 6.40E-26 transposed
Cco10g1506 Cco-Chr10:28251196 Cco11g0302 Cco-Chr11:3027149 3.60E-106 transposed
Cco11g1359 Cco-Chr11:26416175 Cco11g0302 Cco-Chr11:3027149 3.30E-15 transposed
Cco11g0302 Cco-Chr11:3027149 Cco06g1249 Cco-Chr6:22529785 2.00E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0302 K15639 - csv:101208789 996.497