Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0307 ATGATGGCCGGAAGCATAGGCAAAGACGAGTGGTCCGATTACGACAGTAGTTGCTCCTCCTCCGTAACCGTTCCAGACTCGAGCCGTAGCTGGATGAGCAACCTCAGCTTTGGAAGCCGGCGTCGCAGCAGTAGCTCAGCCGCAGAAGGCGGCGTGGAGATGAATAATACGACAACGACGACGACGACATTAGCATTACAAATGATGAAGCCACACAAGGCGAACGAAGTGGGATGGGAGGCCATGCGGTGGCTCCGGGGAGTGAAAGGGGAAGTGGGGTTGGAGCATTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGATATTGGGAATGTTTATTTATGTGAGATAAGGAATCCAATGGTGGGGTTGCCAAAGTGCTTTTATGCAATGAAAGTGGTTGATAGAGAAGCGGTTTGTGTGAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAAATTTTGAAAGTGCTTGATCATCCTTTTTTGCCTACTCTTTATGCGGATTTTGAAGCTTCTCATTATTCTTGTTTGCTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTGCTCGCCAACGTCAACCCAATAAACGTTTCTCCATTTCTTCTGCTAAATTTTATGCGGCAGAGATAATTTTAGCTCTAGAGTATTTGCACATGATGGGCATAATTTACCGAGATTTAAAGCCGGAAAACGTTTTAGTTAGAGAAGACGGCCACATAATGCTCTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAAGCTCATCCGTTGCCGGACCACCGCCTCCGACGTCACCACCGAACGCCACGTCAGATCCTACTCCACCTCAACCATCTCCTGCGCCGCCGCCCCCATTCAACCCGTCCTCTCCTGTTTCTCCATTGCCCGTCGCAAAAAATCCACCACCGTCACCACCATCACCGAACACGCCTCCGCCACACCCGCCGCCGTGTACGGCGACGACAGCGACGGGGACGGCGAAGAATTCGACCCAGAACCAGAATTAATAGCGGAACCAATAAATGCTCGGTCGAAATCATTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAAGGGCACGGCAGCGGTGTGGATTGGTGGACATTGGGAATATTCTTATACGAAATGTTGTACGGAAAGACACCATTTAAAGGGGAAAACAACGAGAATACATTAATGAACATTTTGAAGCAGCCATTAAGGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAAAATCCCAAAAAAAGAATTGGAAGTTTAAAGGGTTCAGTTGAAATCAAAAGACATGATTTTTTCAAAGGACTGAATTGGGCTTTAATTCGATCCGTACGACCTCCACAAATCCCAAACAATAACCTTAATTACTCCAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTATTTCTAA 1536 46.61 MMAGSIGKDEWSDYDSSCSSSVTVPDSSRSWMSNLSFGSRRRSSSSAAEGGVEMNNTTTTTTTLALQMMKPHKANEVGWEAMRWLRGVKGEVGLEHFRLLRRVGSGDIGNVYLCEIRNPMVGLPKCFYAMKVVDREAVCVRNKERRADMEKEILKVLDHPFLPTLYADFEASHYSCLLMEFCPGGDLYAARQRQPNKRFSISSAKFYAAEIILALEYLHMMGIIYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTASDVTTERHVRSYSTSTISCAAAPIQPVLSCFSIARRKKSTTVTTITEHASATPAAVYGDDSDGDGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNENTLMNILKQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHDFFKGLNWALIRSVRPPQIPNNNLNYSKYPSNYLPKLSKKQRQQPYQIPNHHFDYF 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3089334 3091534 - CcPI632755_11g003070.1 Cco11g0307 191543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0307 511 FunFam protein kinase PINOID 182 250 - -
Cco11g0307 511 PANTHER FLIPPASE KINASE 1-RELATED 18 493 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco11g0307 511 Gene3D Transferase(Phosphotransferase) domain 1 186 253 - -
Cco11g0307 511 SUPERFAMILY Protein kinase-like (PK-like) 79 494 IPR011009 -
Cco11g0307 511 MobiDBLite consensus disorder prediction 12 56 - -
Cco11g0307 511 MobiDBLite consensus disorder prediction 1 56 - -
Cco11g0307 511 Gene3D Transferase(Phosphotransferase) domain 1 346 476 - -
Cco11g0307 511 ProSiteProfiles Protein kinase domain profile. 97 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0307 511 FunFam serine/threonine-protein kinase D6PK-like 346 476 - -
Cco11g0307 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0307 511 SMART serkin_6 97 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0307 511 CDD STKc_phototropin_like 96 475 - -
Cco11g0307 511 Gene3D Phosphorylase Kinase; domain 1 95 185 - -
Cco11g0307 511 Pfam Protein kinase domain 98 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0307 511 Pfam Protein kinase domain 348 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0307 511 FunFam protein kinase PINOID 2 95 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0807 Cco-Chr3:8685812 Cco11g0307 Cco-Chr11:3089334 1.20E-108 dispersed
Cco07g1136 Cco-Chr7:25050990 Cco11g0307 Cco-Chr11:3089334 4.20E-93 dispersed
Cco10g1370 Cco-Chr10:26715631 Cco11g0307 Cco-Chr11:3089334 1.20E-113 dispersed
Cco11g0307 Cco-Chr11:3089334 Cco05g0674 Cco-Chr5:5542546 2.10E-21 dispersed
Cco11g0307 Cco-Chr11:3089334 Cco04g1902 Cco-Chr4:33532347 2.70E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87218 PF00069 Pkinase 3.30E-31 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0307 K08286 - csv:101202905 857.44