Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0324 ATGGTGCCATCAAAGAAGTTTAGAGGTGTCAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCCCTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAATGCGAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTTCCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA 726 51.52 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSTSAAAGAASASGGDDDGGQLRKNKKSGCFSGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNYGNPSEIIQVQDHDQGKQPFYPL 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3253956 3255465 - CcPI632755_11g003240.1 Cco11g0324 191560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0324 241 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cco11g0324 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 137 IPR050913 -
Cco11g0324 241 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Cco11g0324 241 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 MobiDBLite consensus disorder prediction 144 166 - -
Cco11g0324 241 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0324 241 Coils Coil 194 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0309 Cco-Chr9:2705837 Cco11g0324 Cco-Chr11:3253956 7.50E-25 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco11g1835 Cco-Chr11:31015923 5.00E-18 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco05g1928 Cco-Chr5:28390230 2.50E-54 wgd
Cco11g0324 Cco-Chr11:3253956 Cco06g1292 Cco-Chr6:23095079 5.30E-60 wgd
Cco11g0324 Cco-Chr11:3253956 Cco07g1345 Cco-Chr7:27552298 3.90E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60231 PF00847 AP2 3.50E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0324 - - - 0.0