Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0329 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.18 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3311911 | 3315615 | - | CcPI632755_11g003290.1 | Cco11g0329 | 191565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0329 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
| Cco11g0329 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
| Cco11g0329 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Cco11g0329 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
| Cco11g0329 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - | |
| Cco11g0329 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1964 | Cco-Chr8:30442812 | Cco11g0329 | Cco-Chr11:3311911 | 2.30E-18 | dispersed | |
| Cco10g0299 | Cco-Chr10:3552306 | Cco11g0329 | Cco-Chr11:3311911 | 4.20E-39 | dispersed | |
| Cco02g2409 | Cco-Chr2:36471252 | Cco11g0329 | Cco-Chr11:3311911 | 1.10E-48 | transposed | |
| Cco05g2647 | Cco-Chr5:34584211 | Cco11g0329 | Cco-Chr11:3311911 | 3.10E-30 | transposed | |
| Cco11g0329 | Cco-Chr11:3311911 | Cco06g1303 | Cco-Chr6:23255525 | 1.20E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60232 | PF04690 | YABBY | 5.30E-71 | CL0114 | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0329 | K25796 | - | csv:101219877 | 387.882 |