Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0329 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.18 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3311911 3315615 - CcPI632755_11g003290.1 Cco11g0329 191565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0329 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cco11g0329 192 CDD HMG-box_SF 120 156 - -
Cco11g0329 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cco11g0329 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cco11g0329 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cco11g0329 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0329 K25796 - - csv:101219877 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1964 Cco-Chr8:30442812 Cco11g0329 Cco-Chr11:3311911 2.30E-18 dispersed
Cco10g0299 Cco-Chr10:3552306 Cco11g0329 Cco-Chr11:3311911 4.20E-39 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco11g0329 Cco-Chr11:3311911 1.10E-48 transposed
Cco05g2647 Cco-Chr5:34584211 Cco11g0329 Cco-Chr11:3311911 3.10E-30 transposed
Cco11g0329 Cco-Chr11:3311911 Cco06g1303 Cco-Chr6:23255525 1.20E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2631 . 65 233 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 8.6e-47 183.7
Cco05g2647 . 65 222 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 4.0e-44 174.9
Cco01g0399 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cco01g0399 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cco06g1303 . 6 178 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 3.8e-42 168.3
Cco11g0329 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.2e-41 164.1
Cco10g0299 . 19 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 3.0e-39 158.7
Cco01g0399 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cco05g2813 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.3 5.1e-40 161.8
Cco06g1303 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cco11g0329 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.3e-61 231.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cco01g0399 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60232 PF04690 YABBY 5.30E-71 CL0114 Cco TF