Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0329 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.18 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 3311911 3315615 - CcPI632755_11g003290.1 Cco11g0329 191565
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0329 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cco11g0329 192 CDD HMG-box_SF 120 156 - -
Cco11g0329 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cco11g0329 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cco11g0329 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cco11g0329 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1964 Cco-Chr8:30442812 Cco11g0329 Cco-Chr11:3311911 2.30E-18 dispersed
Cco10g0299 Cco-Chr10:3552306 Cco11g0329 Cco-Chr11:3311911 4.20E-39 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco11g0329 Cco-Chr11:3311911 1.10E-48 transposed
Cco05g2647 Cco-Chr5:34584211 Cco11g0329 Cco-Chr11:3311911 3.10E-30 transposed
Cco11g0329 Cco-Chr11:3311911 Cco06g1303 Cco-Chr6:23255525 1.20E-70 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60232 PF04690 YABBY 5.30E-71 CL0114 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0329 K25796 - csv:101219877 387.882