Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0344 ATGGAGGAAAATGAAAACTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGTCTCCAAATCTTCCCCTTCTTCCAAACATTCCCCCAACTCCATTCCTCGCCTTAACTTACTTTACGATTCAGCTACCGAGACCCGATATTTAAACGCAAGCGACCGAGATTTGTGTGCGCCGGCCGAAGCTCGGCTATCCTTCGACAATGCTCCGCCGCTGCCGCCGACGAGGTTAGAGGACAAATTTAAACGCCAGTTGCTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGGCCGGATAGCATTCTGGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCCAAACCTGGATCAGGAATCACAGTCGCCGTCAAAAGCTTGAAACCGGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGGTACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACAGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCGCCAGAGTATCTAATGACAGGGCATTTGACATCAAAGAGTGATGTCTATAGCTTCGGCGTTGTCCTACTCGAGATCTTAACGGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAGAACCTAGTGTCATGGGCTCGACCATATTTAGATGACAAAAGGAAGCTTTACCACATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAAAAAGTCTCTCGACTAGCTTCTTACTGCATCAGTAGAGATCCAAAATCTCGTCCTACCATGGATGAAGTTGTCAAGGTTCTCATTCCACTACAAGATCTTAACGACCTTGCCATCCTAGCATATCATTCACGCCTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTACACCAGTTAACATACACCCAATCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGGTAA 1308 45.95 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLNLLYDSATETRYLNASDRDLCAPAEARLSFDNAPPLPPTRLEDKFKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASYCISRDPKSRPTMDEVVKVLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3497078 3503276 - CcPI632755_11g003440.1 Cco11g0344 191580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0344 435 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
Cco11g0344 435 PANTHER OS01G0588500 PROTEIN-RELATED 80 384 IPR050823 -
Cco11g0344 435 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Cco11g0344 435 SUPERFAMILY Protein kinase-like (PK-like) 84 383 IPR011009 -
Cco11g0344 435 FunFam Serine/threonine-protein kinase BIK1 73 186 - -
Cco11g0344 435 CDD STKc_IRAK 107 383 - -
Cco11g0344 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0344 435 ProSiteProfiles Protein kinase domain profile. 101 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0344 435 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0344 435 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524(InterPro)
Cco11g0344 435 FunFam Probable serine/threonine-protein kinase PBL8 187 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1203 Cco-Chr7:25890969 Cco11g0344 Cco-Chr11:3497078 1.10E-108 dispersed
Cco09g2041 Cco-Chr9:34783914 Cco11g0344 Cco-Chr11:3497078 7.50E-141 dispersed
Cco09g2172 Cco-Chr9:36083392 Cco11g0344 Cco-Chr11:3497078 2.90E-119 dispersed
Cco09g2173 Cco-Chr9:36098608 Cco11g0344 Cco-Chr11:3497078 2.30E-101 dispersed
Cco10g0022 Cco-Chr10:300979 Cco11g0344 Cco-Chr11:3497078 8.20E-98 dispersed
Cco10g0213 Cco-Chr10:2204379 Cco11g0344 Cco-Chr11:3497078 2.80E-82 dispersed
Cco10g1822 Cco-Chr10:31886021 Cco11g0344 Cco-Chr11:3497078 1.90E-61 dispersed
Cco10g2261 Cco-Chr10:35482489 Cco11g0344 Cco-Chr11:3497078 2.30E-55 dispersed
Cco11g0344 Cco-Chr11:3497078 Cco11g1152 Cco-Chr11:22539620 7.20E-108 dispersed
Cco11g0344 Cco-Chr11:3497078 Cco06g1321 Cco-Chr6:23481554 2.40E-196 wgd
Cco11g0344 Cco-Chr11:3497078 Cco09g0308 Cco-Chr9:2686711 1.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87219 PF07714 PK_Tyr_Ser-Thr 2.00E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0344 - - - 0.0